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Currently the galaxy tool is watching the logs for GeneNoteBook server started, serving during the startup of gnb. Apparently this message is printed before gnb is really serving. I had this kind of logs:
## LOG: 2024-02-01T21:09:54.752Z Jobqueue started
## LOG: 2024-02-01T21:10:35.273Z GeneNoteBook server started, serving at http://localhost:7000/
## LOG: 2024-02-01T21:10:35.273Z Running GeneNoteBook version 0.4.12
## LOG: 2024-02-01T21:10:35.274Z Migrating user roles schema v1 --> v2
## WARNING: 2024-02-01T21:10:35.278Z MongoServerError: index not found with name [name_1]
at MessageStream.messageHandler (/_conda/envs/__genoboo@0.4.12/share/genoboo-0.4.12-0/programs/server/npm/node_modules/meteor/npm-mongo/node_modules/mongodb/lib/cmap/connection.js:462:30)
at MessageStream.emit (node:events:369:20)
at MessageStream.emit (node:domain:470:12)
at processIncomingData (/_conda/envs/__genoboo@0.4.12/share/genoboo-0.4.12-0/programs/server/npm/node_modules/meteor/npm-mongo/node_modules/mongodb/lib/cmap/message_stream.js:108:16)
at MessageStream._write (/_conda/envs/__genoboo@0.4.12/share/genoboo-0.4.12-0/programs/server/npm/node_modules/meteor/npm-mongo/node_modules/mongodb/lib/cmap/message_stream.js:28:9)
at writeOrBuffer (node:internal/streams/writable:395:12)
at MessageStream.Writable.write (node:internal/streams/writable:340:10)
at Socket.ondata (node:internal/streams/readable:750:22)
at Socket.emit (node:events:369:20)
at Socket.emit (node:domain:470:12)
at addChunk (node:internal/streams/readable:313:12)
at readableAddChunk (node:internal/streams/readable:288:9)
at Socket.Readable.push (node:internal/streams/readable:227:10)
at Pipe.onStreamRead (node:internal/stream_base_commons:190:23) {
ok: 0,
code: 27,
codeName: 'IndexNotFound'
}
## LOG: 2024-02-01T21:10:35.283Z Creating new role "registered"
## LOG: 2024-02-01T21:10:35.285Z Creating new role "user"
## LOG: 2024-02-01T21:10:35.286Z Linking registered --> user
## LOG: 2024-02-01T21:10:35.295Z Creating new role "curator"
## LOG: 2024-02-01T21:10:35.296Z Linking user --> curator
## LOG: 2024-02-01T21:10:35.305Z Creating new role "admin"
## LOG: 2024-02-01T21:10:35.307Z Linking curator --> admin
## LOG: 2024-02-01T21:10:35.318Z Adding default admin user
## LOG: 2024-02-01T21:10:35.422Z Adding default filter option: Note
## LOG: 2024-02-01T21:10:41.002Z Adding default filter option: Dbxref
## LOG: 2024-02-01T21:10:41.008Z Adding default filter option: Ontology Term
## LOG: 2024-02-01T21:10:41.014Z Adding default filter option: Orthogroup
## LOG: 2024-02-01T21:10:41.020Z Adding default filter option: Gene ID
## LOG: 2024-02-01T21:10:41.024Z Adding default filter option: Has changes
## LOG: 2024-02-01T21:10:41.029Z Adding default filter option: Genome
## LOG: 2024-02-01T21:10:41.035Z Adding default filter option: Annotation
node:events:346
throw er; // Unhandled 'error' event
^
Error: listen EADDRINUSE: address already in use 0.0.0.0:7000
at Server.setupListenHandle [as _listen2] (node:net:1311:16)
at listenInCluster (node:net:1359:12)
at doListen (node:net:1497:7)
at processTicksAndRejections (node:internal/process/task_queues:82:21)
Emitted 'error' event on Server instance at:
at emitErrorNT (node:net:1338:8)
at processTicksAndRejections (node:internal/process/task_queues:81:21) {
code: 'EADDRINUSE',
errno: -98,
syscall: 'listen',
address: '0.0.0.0',
port: 7000
}
Galaxy is not able to detect the error because of the previous GeneNoteBook server started, serving
The text was updated successfully, but these errors were encountered:
Currently the galaxy tool is watching the logs for
GeneNoteBook server started, serving
during the startup of gnb. Apparently this message is printed before gnb is really serving. I had this kind of logs:Galaxy is not able to detect the error because of the previous
GeneNoteBook server started, serving
The text was updated successfully, but these errors were encountered: