Update README to point to readthedocs.

Removed docs directory.
Update source to remove "bigtools" nomenclature.

README.md

@@ -1,28 +1,34 @@
-BigTools
-==========================
+grid-computing-tools
+====================
 
-BigTools is intended to be a place for scripts and recipes for solving some very common issues,
-which typically fall under the category of "simple for a few files, hard for many files."
+The grid-computing-tools repo is intended to be a place for scripts and
+recipes for solving some very common issues, which typically fall under
+the category of "simple for a few files, hard for many files."
 Examples include:
 
 * I have many VCFs in Cloud Storage that I need to (de)compress
 * I have many VCFs in Cloud Storage that have something wrong with the header
 * I have many BAMs in Cloud Storage for which I need to compute index files
 
-BigTools Components
--------------------
+grid-computing-tools components
+-------------------------------
 
-The primary components of the BigTools examples are:
+The primary components of the grid-computing-tools examples are:
 
-* Google Cloud Storage - location of source input files and destination for output files
-* Google Compute Engine - virtual machines in the cloud
-* Grid Engine - job scheduling software to distribute commands across a cluster of virtual machines
+* [Google Cloud Storage](https://cloud.google.com/storage/) - location of source input files and destination for output files
+* [Google Compute Engine](https://cloud.google.com/compute/) - virtual machines in the cloud
+* [Grid Engine](http://gridengine.info/) - job scheduling software to distribute commands across a cluster of virtual machines
 
-The BigTools approach is intended to provide a familiar environment to computational scientists who
-are accustomed to using Grid Engine to submit jobs to fixed-size clusters available at their research institution.
+The approach here is intended to provide a familiar environment to
+computational scientists who are accustomed to using Grid Engine to
+submit jobs to fixed-size clusters available at their research institution.
 
 Available Tools
 ---------------
+Documentation for the tools in this repo can be found at
+http://googlegenomics.readthedocs.org/
+
 The following tools are available:
 
-* [Compress/Decompress files in Google Cloud Storage] (https://github.com/googlegenomics/bigtools/blob/master/docs/compress.rst)
+* [Compress/Decompress files in Google Cloud Storage](http://googlegenomics.readthedocs.org/en/latest/use_cases/compress_or_decompress_many_files/index.html)
+* [With SAMtools index BAM files in Google Cloud Storage](http://googlegenomics.readthedocs.org/en/latest/use_cases/run_samtools_over_many_files/index.html)