Merge pull request #115 from googlegenomics/calbach-patch-1

Don't set the RG tag using read.getReadGroupId()
googlegenomics · Apr 19, 2017 · 8dce1a3 · 8dce1a3
2 parents 2429242 + c291da9
commit 8dce1a3
Showing 1 changed file with 0 additions and 3 deletions.
diff --git a/src/main/java/com/google/cloud/genomics/utils/grpc/ReadUtils.java b/src/main/java/com/google/cloud/genomics/utils/grpc/ReadUtils.java
@@ -239,9 +239,6 @@ public static final SAMRecord makeSAMRecord(Read read, SAMFileHeader header) {
     if (read.getFragmentName() != null) {
       record.setReadName(read.getFragmentName());
     }
-    if (read.getReadGroupId() != null && !read.getReadGroupId().isEmpty()) {
-      record.setAttribute("RG" ,read.getReadGroupId());
-    }
     // Set flags, as advised in http://google-genomics.readthedocs.org/en/latest/migrating_tips.html
     int flags = getFlags(read);
     record.setFlags(flags);