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Update install.rst
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susannasiebert committed Jan 5, 2017
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Showing 1 changed file with 1 addition and 15 deletions.
16 changes: 1 addition & 15 deletions docs/install.rst
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Expand Up @@ -59,21 +59,7 @@ Download the archives for `class I <http://tools.iedb.org/mhci/download/>`_ and

Open ``method/netmhc_4_0_executable/__init__.py`` and delete/comment out the first line (``import pkg_resources``). Also delete/comment out the same line of code from ``method/netmhcpan_3_0_executable/__init__.py`` on line 7.

Open ``src/util.py`` and delete/comment out lines 64-66:

.. code-block:: python
if len(filter(None, input_sequences)) >= 2:
sys.stderr.write("ERROR: You can only submit one Fasta sequence.\n")
exit(1)
Open ``src/predict_binding.py`` and delete/comment out line 75:

.. code-block:: python
assert (len(length) == len(proteins.sequences))
If you want to use the NerMHCcons prediction algorithm you will need to change the shebang line of certain files to explicitly use python2.7. The files in question are:
If you want to use the NetMHCcons prediction algorithm you will need to change the shebang line of certain files to explicitly use python2.7. The files in question are:

* ``method/netMHCcons-1.1/bin/pseudofind``
* ``method/netMHC-3.4/netMHC``
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