Search results

ERROR in "regtools junctions annotate"

Status: Open.

#201 In griffithlab/regtools;

· dreammxy opened on May 14, 2025

Junction annotation question (unknown_strand)

Status: Open.

#200 In griffithlab/regtools;

· SaraAlidadiani opened on Feb 12, 2025

RNA stranded sequencing with wrong XS tags

Status: Open.

#199 In griffithlab/regtools;

· zhangpicb opened on Feb 6, 2025

Questions on using BAM file generated by 10X Cellranger

Status: Open.

#198 In griffithlab/regtools;

· Paria06 opened on Jan 21, 2025

Regtools junction extract: strandness detection malfunction

Status: Open.

#197 In griffithlab/regtools;

· santataRU opened on Oct 22, 2024

Issues with Regtools Statistical Analysis Workflow

Status: Open.

#190 In griffithlab/regtools;

· mguaita opened on Sep 16, 2024

feat: Allow read filtering based on mapping quality to <code>junctions extract</code>

Status: Open.

#189 In griffithlab/regtools;

· yfarjoun opened on Jul 3, 2024

Bug: min_intron_length_ accidentally initialized from anchor (not intron) length parameter

Status: Open.

#188 In griffithlab/regtools;

· TimD1 opened on Jul 1, 2024

bug report: junction extract tool should not count overlapping reads as double support for a junction

Status: Open.

#187 In griffithlab/regtools;

· yfarjoun opened on Jun 26, 2024

Feature request: add per-read anchor requirement to <code>junction extract</code> tool

Status: Open.

#186 In griffithlab/regtools;

· yfarjoun opened on Jun 26, 2024

Unrecognized strandness argument!

Status: Open.

#185 In griffithlab/regtools;

· hsymoon opened on May 11, 2024

KeyError: 'score' problem

Status: Open.

#184 In griffithlab/regtools;

· CuteGold0407 opened on Apr 10, 2024