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I am not sure my script is totally correct but I would appreciate if you could fix the bug and also provide an example of output files when executing with the -b option.
Thank you,
The text was updated successfully, but these errors were encountered:
Hi, thank you for the development of such a great tool!
I executed
junctions extract
with the option-b
to get junction read counts for each cell from a standard 10x scRNA-seq bam file:barcode.tsv.gz
is a file generated bycellranger mapping
:But I found the output file (
test.junc
) was the same as the file generated without the-b
option.Besides the barcode file was overwritten like below:
The log says the barcode file was correctly taken as an argument:
I am not sure my script is totally correct but I would appreciate if you could fix the bug and also provide an example of output files when executing with the
-b
option.Thank you,
The text was updated successfully, but these errors were encountered: