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Hi,
I'm trying to install bigvis package on OS X with R version 3.0.2. I get the following error:
> devtools::install_github("bigvis") Installing github repo bigvis/master from hadley Downloading bigvis.zip from https://github.com/hadley/bigvis/archive/master.zip Installing package from /var/folders/3f/_zkl_z552jg83n5qcjw6s59h0000gn/T//Rtmpu6fGpR/bigvis.zip arguments 'minimized' and 'invisible' are for Windows only Installing bigvis '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla CMD INSTALL \ '/private/var/folders/3f/_zkl_z552jg83n5qcjw6s59h0000gn/T/Rtmpu6fGpR/devtools5bf3f1f792d/bigvis-master' \ --library='/Library/Frameworks/R.framework/Versions/3.0/Resources/library' \ --install-tests * installing *source* package 'bigvis' ... ** libs clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c BigVis.cpp -o BigVis.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c BinnedVector.cpp -o BinnedVector.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c BinnedVectors.cpp -o BinnedVectors.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c Summary2d.cpp -o Summary2d.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c condense.cpp -o condense.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c double-diff-sum.cpp -o double-diff-sum.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c frange.cpp -o frange.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c group.cpp -o group.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c lowerBound.cpp -o lowerBound.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c smooth-nd.cpp -o smooth-nd.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c stats.cpp -o stats.o clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I../inst/include -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/BH/include" -fPIC -mtune=core2 -g -O2 -c summary.cpp -o summary.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o bigvis.so BigVis.o BinnedVector.o BinnedVectors.o RcppExports.o Summary2d.o condense.o double-diff-sum.o frange.o group.o lowerBound.o smooth-nd.o stats.o summary.o /Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/lib/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.0/Resources/library/bigvis/libs ** R ** data *** moving datasets to lazyload DB ** inst ** preparing package for lazy loading in method for 'show' with signature '"Rcpp_BinnedVector"': no definition for class "Rcpp_BinnedVector" in method for 'as.integer' with signature '"Rcpp_BinnedVector"': no definition for class "Rcpp_BinnedVector" ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/bigvis/libs/bigvis.so': dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/bigvis/libs/bigvis.so, 6): Symbol not found: __Z8demangleRKNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEE Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/bigvis/libs/bigvis.so Expected in: flat namespace in /Library/Frameworks/R.framework/Versions/3.0/Resources/library/bigvis/libs/bigvis.so Error: loading failed Execution halted ERROR: loading failed * removing '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/bigvis' Error: Command failed (1)
The text was updated successfully, but these errors were encountered:
Can you please reinstall Rcpp from source (install.packages("Rcpp", type = "source")) and try again?
install.packages("Rcpp", type = "source")
Sorry, something went wrong.
Works fine, thanks!
That worked for me too (similar problem, different package). If someone wants to explain why I would much appreciate it.
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Hi,
I'm trying to install bigvis package on OS X with R version 3.0.2.
I get the following error:
The text was updated successfully, but these errors were encountered: