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system quoting fails with testthat + CMD check #144
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It's R. I am getting the same issue if I just try some Ubuntu 14.04, R 3.1.0. |
Good to know, Dirk. Let's close this issue then. |
Noooo -- I want it fixed too :-/ We need to find a fix that is orthogonal to whether it gets tickled by devtools or testthat or youknowhat. |
I agree but from your new information this sounds like an R issue, not a testthat issue right? I certainly don't mind keeping this bug open, but I would not want to clutter testthat with a bug that's not really actionable by its author, unless we consider a work around I suppose. Don't you think it's better to report this to R core and deal with it there? |
This is an R issue. In devtools we have (in the context of setting environment variables): # When R CMD check runs tests, it sets R_TESTS. When the tests
# themeselves run R CMD xxxx, as is the case with the tests in
# devtools, having R_TESTS set causes errors because it confuses
# the R subprocesses. Unsetting it here avoids those problems.
"R_TESTS" = "", |
Just came here to confirm that adding Sys.setenv("R_TESTS" = "") to the testfile seems to take care of these issues. |
Has this been reported to R-core? If so, where? Thanks. |
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pRoloc@102237 bc3139a8-67e5-0310-9ffc-ced21a209358
git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@102243 bc3139a8-67e5-0310-9ffc-ced21a209358
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase@102243 bc3139a8-67e5-0310-9ffc-ced21a209358
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pRoloc@102237 bc3139a8-67e5-0310-9ffc-ced21a209358
Setting R_TESTS environment variable to emply string should solve error on Travis when running test that uses system.file.
The bug was due to R getting confused by set `R_TESTS` environment variable; un-setting fixes the issue. See r-lib/testthat#144 for details.
ref here: r-lib/testthat#144
Below is a minimal example:
Put the following in tests/testthat.R:
In tests/testthat/test.R
Then run
R CMD check
(either with 3.1 or with the current devel version), I get the following error:If I source
test.R
or runR CMD BATCH test.R
or puttest.R
directly in thetests
folder and then runR CMD check
, it runs fine.The error is similar to #129 and #86.
I'm using Ubuntu 64-bit, both 13.10 and 14.04.
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