Merge pull request #220 from hammerlab/fix-schema-contig-chromosome

schema.sql fix: chromosome -> contig
hammerlab · Nov 20, 2014 · 7101e11 · 7101e11
2 parents 7daa925 + 64e1b42
commit 7101e11
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/schema.sql b/schema.sql
@@ -20,8 +20,8 @@ CREATE TABLE vcf_annotations (
        vcf_id BIGINT REFERENCES vcfs NOT NULL,
        annotation TEXT NOT NULL,
        type TEXT NOT NULL,
-       "chromosome:start" TEXT,
-       "chromosome:end" TEXT,
+       "contig:start" TEXT,
+       "contig:end" TEXT,
        "position:start" TEXT,
        "position:end" TEXT
 );
@@ -30,16 +30,16 @@ CREATE TABLE data_annotations (
        dataset_name TEXT, -- The denormalized foreign key of a dataset, stored in the vcfs table.
        annotation TEXT NOT NULL,
        type TEXT NOT NULL,
-       "chromosome:start" TEXT,
-       "chromosome:end" TEXT,
+       "contig:start" TEXT,
+       "contig:end" TEXT,
        "position:start" TEXT,
        "position:end" TEXT
 );
 
 CREATE TABLE genotypes (
        vcf_id BIGINT REFERENCES vcfs NOT NULL,
        sample_name TEXT,
-       chromosome TEXT,
+       contig TEXT,
        position TEXT,
        id TEXT,
        reference TEXT,