Fix variant reading into intron #83
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…ant that runs into the intron, for some transcript.
…ariant/transcript pairs.
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iskandr
requested changes
May 24, 2017
| @@ -10,6 +10,6 @@ set -o errexit | |||
| find . -name '*.py' \ | |||
| | xargs pylint \ | |||
| --errors-only \ | |||
| --disable=print-statement,unsubscriptable-object,not-an-iterable,no-member | |||
| --disable=print-statement,unsubscriptable-object,not-an-iterable,no-member,invalid-unary-operand-type | |||
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Ha, where did this error pop up?
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in isovar.read_helpers line 59 :)
test/test_reference_sequence_key.py
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| variant=variant, | ||
| transcript=transcript, | ||
| context_size=10) | ||
| assert sequence_key == None, '%s\n%s' % (sequence_key, transcript) |
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Nit: Use is for comparing to None (https://www.python.org/dev/peps/pep-0008/#programming-recommendations)
iskandr
approved these changes
May 24, 2017
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Fixes #82
This change is