getMeth relation to CpGs

[ravitharakan]

I am using getMeth to pull the M matrix directly, but I only get a matrix with no labels for the rows. How do I figure out which CpGs are which rows? Are they in order?

[kasperdanielhansen]

The M matrix is the same order as the embedded GRanges which you can get with rowRanges(OBJECT)

…

On Mon, Aug 3, 2020 at 5:03 AM ravitharakan ***@***.***> wrote: I am using getMeth to pull the M matrix directly, but I only get a matrix with no labels for the rows. How do I figure out which CpGs are which rows? Are they in order? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#96>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABF2DHZY54GHO7ZX6WOJUILR6YSIJANCNFSM4PS4T6CQ> .

-- Best, Kasper