v0.1.3 (r256)

Chromap v0.1.3 now can be installed on macOS via Conda!

This release includes the following improvement or bug fix.

• Try to support compiling with clang.
• Make the output in pairs format deterministic when using different number of threads. (This release has no difference with the previous release on results in pairs format after sorting by read names.)

Note that there is no need to update to this version if you use Chromap v0.1.2 to process your data.

v0.1.2 (r244)

This release includes the following improvement or bug fix.

• Fix an issue in generating SAM in low memory mode.
• Perform an actual trim on the sequences and their base quality scores.
• Improve the documentation.

v0.1.1 (r234)

This release includes the following improvement or bug fix.

1. Output MAPQ in BED.
2. Add CB tag for corrected barcodes in SAM.
3. Output seq and qual in SAM.
4. Fix a memory leak when outputing SAM.
5. Fix an issue when no read is mapped.
6. Fix an issue of wrong start position for reverse alignments in SAM.
7. Improve MAPQ estimation for single-end read mappings.
8. Add the option "--read-format" for customized read and barcode format.
9. Support barcode size up to 32bp.
10. Improve candidate cache efficiency.
11. Fix an issue causing cache store empty entries.
12. Support output of version number.
13. Add a man page to explain the setting of each parameter.

Chromap-v0.1

Initial release of Chromap.