chore: Migrate to pnpm

.github/dependabot.yml

@@ -0,0 +1,13 @@
+version: 2
+updates:
+  # Maintain dependencies for GitHub Actions
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"
+
+  # Maintain dependencies for npm
+  - package-ecosystem: "npm"
+    directory: "/"
+    schedule:
+      interval: "monthly"

.github/workflows/build_and_deploy.yml

@@ -3,23 +3,27 @@ on:
   push:
     branches:
       - main
+
+permissions:
+  contents: write
+
 jobs:
   build-and-deploy:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-node@v3
+      - uses: pnpm/action-setup@v4
         with:
-          node-version: '18.x'
-
-      - run: npm ci
-      - run: npm run export && touch out/.nojekyll
+          run_install: true
+      - run: |
+          pnpm build
+          touch dist/.nojekyll
 
       - name: Deploy 🚀
         uses: JamesIves/github-pages-deploy-action@3.7.1
         with:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           BRANCH: gh-pages
-          FOLDER: out
+          FOLDER: dist
           CLEAN: true
           CLEAN_EXCLUDE: '["v0.1", "v0.2", "v0.3"]' # Manually add endpoints to keep

.github/workflows/test.yml

@@ -14,10 +14,8 @@ jobs:
 
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-node@v3
+      - uses: pnpm/action-setup@v4
         with:
-          node-version: '18.x'
-
-      - run: npm ci
-      - run: npm run check
-      - run: npm run lint
+          run_install: true
+      - run: pnpm check
+      - run: pnpm lint

.gitignore

@@ -1,36 +1,8 @@
-# See https://help.github.com/articles/ignoring-files/ for more about ignoring files.
-
-# dependencies
-/node_modules
-/.pnp
-.pnp.js
-
-# testing
-/coverage
-
-# production
-/build
-
-# misc
+node_modules
 .DS_Store
-.env.local
-.env.development.local
-.env.test.local
-.env.production.local
-
-npm-debug.log*
-yarn-debug.log*
-yarn-error.log*
-
-.next/*
-out/*
-
-example/*.zarr
-example/.ipynb_checkpoints/*
-example/data/**
-__pycache__
-
 .venv
 .ipynb_checkpoints
 dist/
-astronaut.zarr
+__pycache__
+
+/python/notebooks/*.zarr/