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Cookiecutter template for a metagenomics pipeline's stage with GitHub Actions CI.

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horothesun/metagenomics-pipeline-stage-template

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Metagenomics pipeline - Stage template

CI Linux

Requirements

Usage

cd <main project folder>
cookiecutter https://github.com/horothesun/metagenomics-pipeline-stage-template
cd <stage folder>
cat __REMOVE__How-to-integrate-the-stage.md

and follow the steps to integrate it with your project.