Missing CRISPRCas prediction rule

[susheelbhanu]

The rule for spacepharer is setup based on the exisiting SLURM script, however, I think we're missing a rule for the crisprcas prediction needed for this tool.

@michoug Did you run minced or something else?

File in reference: https://github.com/hpeter0803/viromes/blob/main/workflow/rules/spacepharer.smk

[michoug]

Yes, forgot to push the updated scriptSpacePharer file, will update the rule

[susheelbhanu]

Yes, forgot to push the updated scriptSpacePharer file, will update the rule

Thank you!!

[susheelbhanu]

Spacepharer failing to run through. See soedinglab/spacepharer#8

PHIST failing with the following error:

Traceback (most recent call last):
  File "/mnt/irisgpfs/projects/nomis/assemblies/viromes/workflow/rules/../../deps/phist/phist.py", line 78, in <module>
    oh = open(lst_path, 'w')
FileNotFoundError: [Errno 2] No such file or directory: '/mnt/irisgpfs/projects/nomis/assemblies/virome_results/phist/vir.list'

See refresh-bio/PHIST#9