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fixed bug in run_mlm_flax_stream.py #17203

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KennethEnevoldsen
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@KennethEnevoldsen KennethEnevoldsen commented May 12, 2022

What does this PR do?

Fixed bug caused by additional keys (id, text) referring to non-list values when concatenating samples. An alternative option is to drop these columns in the dataset before passing it to iter.

Fixes #17132 by @HLasse.

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@patrickvonplaten (tagged in bug)
@patil-suraj (assigned to bug)

Fixed bug caused by an update to tokenizer keys introduced in recent transformers versions (between `4.6.2` and `4.18.0`) where additional keys were introduced to the tokenizer output.
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HuggingFaceDocBuilderDev commented May 12, 2022

The documentation is not available anymore as the PR was closed or merged.

@KennethEnevoldsen KennethEnevoldsen changed the title fixed bug run_mlm_flax_stream.py caused by an update to the tokenizer output fixed bug in run_mlm_flax_stream.py May 12, 2022
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Thanks for the PR. This solution looks good, but I think the better option would to just drop the other columns, like its done in PT script.

column_names = raw_datasets["train"].column_names

remove_columns=column_names,

@KennethEnevoldsen
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No problem. Tried using the remove_columns argument as in the example but the map functions do not take that argument (probably easy to add):

tokenized_datasets = dataset.map(
        tokenize_function,
        batched=True,
        remove_columns=column_names,
    )

Similar it might be nice for consistency to add the .column_names extensions to the IterableDataset.

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No problem. Tried using the remove_columns argument as in the example but the map functions do not take that argument (probably easy to add):

tokenized_datasets = dataset.map(
        tokenize_function,
        batched=True,
        remove_columns=column_names,
    )

Similar it might be nice for consistency to add the .column_names extensions to the IterableDataset.

Pinging @lhoestq here. Is not possible to pass remove column to streaming dataset ?

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lhoestq commented May 13, 2022

@KennethEnevoldsen
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Indeed it does. I was using datasets version 1.17.0. Rerunning with an updated version indeed resolved the issue.

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Another note here, seems like the max_seq_length state that each text is truncated to e.g. max_seq_length, but from what I can read in the advance_iter_and_group_samples it seems like they are concatenated and split in groups of max_seq_length (with the remainder being discarded)

I would probably change it from:

    max_seq_length: Optional[int] = field(
        default=None,
        metadata={
            "help": "The maximum total input sequence length after tokenization. Sequences longer "
            "than this will be truncated. Default to the max input length of the model."
        },
    )

to:

    max_seq_length: Optional[int] = field(
        default=None,
        metadata={
            "help": "The maximum total input sequence length after tokenization. Sequences are concatenated in groups of max_seq_length. Default to the max input length of the model."
        },
    )

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LGTM!

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Another note here, seems like the max_seq_length state that each text is truncated to e.g. max_seq_length, but from what I can read in the advance_iter_and_group_samples it seems like they are concatenated and split in groups of max_seq_length (with the remainder being discarded)

I would probably change it from:

    max_seq_length: Optional[int] = field(
        default=None,
        metadata={
            "help": "The maximum total input sequence length after tokenization. Sequences longer "
            "than this will be truncated. Default to the max input length of the model."
        },
    )

to:

    max_seq_length: Optional[int] = field(
        default=None,
        metadata={
            "help": "The maximum total input sequence length after tokenization. Sequences are concatenated in groups of max_seq_length. Default to the max input length of the model."
        },
    )

Good catch! Feel free to open another PR if you would like to fix this.

@patil-suraj patil-suraj merged commit 71d18d0 into huggingface:main May 16, 2022
ArthurZucker pushed a commit to ArthurZucker/transformers that referenced this pull request May 17, 2022
* fixed bug run_mlm_flax_stream.py

Fixed bug caused by an update to tokenizer keys introduced in recent transformers versions (between `4.6.2` and `4.18.0`) where additional keys were introduced to the tokenizer output.

* Update run_mlm_flax_stream.py

* adding missing paranthesis

* formatted to black

* remove cols from dataset instead

* reformat to black

* moved rem. columns to map

* formatted to black

Co-authored-by: KennethEnevoldsen <kennethcenevolsen@gmail.com>
@KennethEnevoldsen KennethEnevoldsen deleted the fix_bug/run_mlm_flax.py branch May 19, 2022 13:08
Narsil pushed a commit to Narsil/transformers that referenced this pull request May 30, 2022
fix tokenizer autodoc

fix minor CI issues

fix minor CI issues

fix minor CI issues

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fix few issues

remove def main on the test

add require torch

replace decorator with 'with'

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let's try this one

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fixed bug in run_mlm_flax_stream.py (huggingface#17203)

* fixed bug run_mlm_flax_stream.py

Fixed bug caused by an update to tokenizer keys introduced in recent transformers versions (between `4.6.2` and `4.18.0`) where additional keys were introduced to the tokenizer output.

* Update run_mlm_flax_stream.py

* adding missing paranthesis

* formatted to black

* remove cols from dataset instead

* reformat to black

* moved rem. columns to map

* formatted to black

Co-authored-by: KennethEnevoldsen <kennethcenevolsen@gmail.com>

 Updated checkpoint support for Sagemaker Model Parallel (huggingface#17219)

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Remove next sentence prediction from supported ONNX tasks (huggingface#17276)

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Mlflowcallback fix nonetype error (huggingface#17171)

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elusenji pushed a commit to elusenji/transformers that referenced this pull request Jun 12, 2022
* fixed bug run_mlm_flax_stream.py

Fixed bug caused by an update to tokenizer keys introduced in recent transformers versions (between `4.6.2` and `4.18.0`) where additional keys were introduced to the tokenizer output.

* Update run_mlm_flax_stream.py

* adding missing paranthesis

* formatted to black

* remove cols from dataset instead

* reformat to black

* moved rem. columns to map

* formatted to black

Co-authored-by: KennethEnevoldsen <kennethcenevolsen@gmail.com>
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Dataset streaming example not working
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