RNA Seq Checks
lindaxiang edited this page Sep 8, 2022
·
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| Validation Script | Validation Rule | Note |
|---|---|---|
| c690_check_strand_specificity_in_bam | If experiment_strategy==RNA-seq,verifies library_strandedness matches alignment in BAMs |
|
| c691_check_strand_specificity_in_fastq | If experiment_strategy==RNA-seq,verifies library_strandedness matches alignment in subsampled and aligned FASTQs |
Intro
Installation
Seq-tools Validation Checks Category
Validation Report