Sequencing Data Integrity Checks

Validation Script	Validation Rule	Note
c608_bam_sanity	Verifies files follow BAM file format standards
c609_fastq_sanity	Verifies provided FASTQ files follow FASTQ file format standards
c610_rg_id_in_bam	IDs in BAM header exist, are unique and conform to the following regex: ^[0-9a-zA-Z-_:\'\.\+]+$
c640_one_sm_in_bam_header	Only a single SM entry exists in BAM header