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Update libmesh
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Summary of changes:
  - Exodus improvements
  - Update metaphysicl
  - ExodusII_IO: Fix indexing issue in read_elemental_var_values().
  - Add member function sub_matrix in DenseMatrix
  - Assert consistent ErrorVector values for flagging
  - Remove deprecated Elem API calls.
  - shared_ptr<GhostingFunctor> support
  - The 'node' variable is now used independently of setting unique ids.
  - DofMap::local_variable_indices() bugfix
  - Overzealous warnings in distributed corner case
  - CheckpointIO support for extra DofObject integers
  - Forward declare DualNumber in order to use DenseMatrix<DualNumber>
  - Drop long-deprecated Elem APIs.
  - Two updates to PR #2103.
  - Add FEMContext::interior_rate_gradient
  - Mesh stitching fixes for NodeElems
  - MeshBase::add_elem_integer() API
  - GenericProjector rewrite
  - Subdomain-restricted variables hanging nodes fix
  - Fix 2006 bug with refinement within ES::reinit()
  - DofMap::reinit_send_list(), Overlapping Coupling Test
  - Fix remote_elem copying in UnstructuredMesh
  - Only skip noncritical partitioning in BoundaryMesh
  - Add outer product for TypeVectors
  - Remove redundant (and shadowing) fe
  - Factor out a DenseMatrixBase implementation header
  - Re-implement parallel sync using the NBX algorithm
  - Drop VecScatterCreateWithData() workaround.
  - Revert changes from #2078 to rb_construction.C.

Refs #000
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lindsayad committed May 3, 2019
1 parent 687e45f commit cba0d92
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion libmesh
Submodule libmesh updated 85 files
+18 −0 NEWS
+1 −1 contrib/metaphysicl
+4 −0 doc/citations/eighteen.bib
+95 −0 doc/citations/nineteen.bib
+18 −63 doc/citations/preprints.bib
+25 −0 doc/citations/theses.bib
+2,167 −807 doc/html/src/publications.html
+1 −0 doc/statistics/cloc_libmesh.py
+36 −1 doc/statistics/github_traffic_plotclones.csv
+36 −1 doc/statistics/github_traffic_plotviews.csv
+4 −4 doc/statistics/libmesh_citations.py
+4 −2 doc/statistics/libmesh_mailinglists.py
+2 −0 doc/statistics/libmesh_pagehits.py
+4 −5 examples/adaptivity/adaptivity_ex3/run.sh
+0 −6 examples/miscellaneous/miscellaneous_ex14/miscellaneous_ex14.C
+2 −2 examples/miscellaneous/miscellaneous_ex6/miscellaneous_ex6.C
+1 −0 include/Makefile.in
+86 −2 include/base/dof_map.h
+202 −23 include/base/dof_object.h
+17 −0 include/base/ghosting_functor.h
+7 −0 include/base/id_types.h
+0 −167 include/geom/elem.h
+1 −0 include/include_HEADERS
+4 −0 include/libmesh/Makefile.am
+16 −13 include/libmesh/Makefile.in
+18 −0 include/mesh/checkpoint_io.h
+13 −0 include/mesh/exodusII_io.h
+92 −2 include/mesh/mesh_base.h
+70 −16 include/numerics/dense_matrix.h
+133 −0 include/numerics/dense_matrix_base_impl.h
+20 −3 include/numerics/dense_matrix_impl.h
+5 −6 include/numerics/petsc_macro.h
+14 −0 include/numerics/type_tensor.h
+56 −7 include/parallel/communicator.h
+95 −0 include/parallel/parallel_implementation.h
+195 −286 include/parallel/parallel_sync.h
+5 −0 include/reduced_basis/rb_data_deserialization.h
+12 −0 include/systems/fem_context.h
+1,852 −766 include/systems/generic_projector.h
+42 −8 include/systems/system.h
+3 −0 include/utils/ignore_warnings.h
+129 −9 src/base/dof_map.C
+17 −5 src/base/dof_map_constraints.C
+143 −36 src/base/dof_object.C
+2 −2 src/base/sparsity_pattern.C
+200 −187 src/fe/fe_base.C
+1 −0 src/fe/fe_hierarchic.C
+19 −8 src/geom/elem_refinement.C
+3 −3 src/mesh/boundary_info.C
+137 −12 src/mesh/checkpoint_io.C
+9 −0 src/mesh/distributed_mesh.C
+55 −0 src/mesh/exodusII_io.C
+11 −3 src/mesh/exodusII_io_helper.C
+52 −0 src/mesh/mesh_base.C
+2 −3 src/mesh/mesh_communication.C
+2 −2 src/mesh/mesh_refinement.C
+20 −0 src/mesh/mesh_refinement_flagging.C
+1 −7 src/mesh/mesh_tools.C
+11 −1 src/mesh/namebased_io.C
+1 −1 src/mesh/nemesis_io.C
+51 −4 src/mesh/replicated_mesh.C
+5 −8 src/mesh/unstructured_mesh.C
+4 −4 src/mesh/xdr_io.C
+1 −109 src/numerics/dense_matrix_base.C
+43 −8 src/parallel/communicator.C
+9 −19 src/reduced_basis/rb_construction.C
+2 −4 src/solvers/petsc_dm_wrapper.C
+4 −14 src/systems/equation_systems.C
+13 −1 src/systems/fem_context.C
+93 −20 src/systems/system.C
+1 −1 src/systems/system_io.C
+164 −26 src/systems/system_projection.C
+4 −0 tests/Makefile.am
+468 −36 tests/Makefile.in
+119 −0 tests/base/dof_object_test.h
+806 −0 tests/base/overlapping_coupling_test.C
+6 −6 tests/mesh/boundary_mesh.C
+191 −0 tests/mesh/extra_integers.C
+16 −0 tests/numerics/dense_matrix_test.C
+18 −1 tests/numerics/type_tensor_test.C
+103 −0 tests/parallel/message_tag.C
+590 −0 tests/parallel/parallel_sync_test.C
+2 −2 tests/run_unit_tests.sh.in
+4 −3 tests/systems/equation_systems_test.C
+243 −29 tests/systems/systems_test.C

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