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Ensembl Gene IDs #15

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mw55309 opened this issue Mar 23, 2021 · 3 comments
Closed

Ensembl Gene IDs #15

mw55309 opened this issue Mar 23, 2021 · 3 comments
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enhancement New feature or request

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@mw55309
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mw55309 commented Mar 23, 2021

Are Ensembl gene sets supported?

I have just started using msigdbr and I cannot find any in the gene sets I have seen so far

Thanks!

@igordot
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igordot commented Mar 23, 2021

There are no Ensembl IDs currently. From what I understand, originally only the gene symbols and NCBI Entrez IDs were provided. This is still the case for the XML database.

Since there is now clear interest, I will add the Ensembl IDs.

@igordot igordot added the enhancement New feature or request label Mar 23, 2021
@northNomad
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There are no Ensembl IDs currently. From what I understand, originally only the gene symbols and NCBI Entrez IDs were provided. This is still the case for the XML database.

Since there is now clear interest, I will add the Ensembl IDs.

Looking forward to the update!

@igordot
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igordot commented May 5, 2021

The latest release includes both Entrez and Ensembl IDs. It is now available on both GitHub and CRAN.

@igordot igordot closed this as completed May 5, 2021
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