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I am running GSEA analysis in 10X spatial and scRNA-seq data and I would like to use KEGG dataset.
Which function/category should I run?
For Hallmark, I run m_df<- msigdbr(species = "Homo sapiens", category = "H")
but category = "KEGG" does not work. I would greatly appreciate your advice.
Thank you.
The text was updated successfully, but these errors were encountered:
@igordot @smped @vreuter @actions-user
Hello msigdbr team,
I am running GSEA analysis in 10X spatial and scRNA-seq data and I would like to use KEGG dataset.
Which function/category should I run?
For Hallmark, I run m_df<- msigdbr(species = "Homo sapiens", category = "H")
but category = "KEGG" does not work. I would greatly appreciate your advice.
Thank you.
The text was updated successfully, but these errors were encountered: