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SCSig collection #8

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kokitsuyuzaki opened this issue Nov 26, 2019 · 3 comments
Closed

SCSig collection #8

kokitsuyuzaki opened this issue Nov 26, 2019 · 3 comments
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enhancement New feature or request

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@kokitsuyuzaki
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Dear @igordot

Thanks for the nice package!

Recent MSigDB provides SCSig collection: Signatures of Single Cell Identities
http://software.broadinstitute.org/gsea/msigdb/supplementary_genesets.jsp#SCSig
so I appreciate if you could extend this package to SCSig gene set.

Regards,

Koki

@igordot
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igordot commented Dec 3, 2019

Thank you for the suggestion. Right now, I am just using the gene sets that are considered part of the MSigDB (what is listed on the Downloads/Browse/Search pages). I am not sure if SCSig should actually be considered an independent resource. Otherwise, it may be lead to some confusion. I am hoping that the next release of MSigDB will include notes to clarify the situation.

@igordot igordot added the enhancement New feature or request label Dec 3, 2019
@igordot
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igordot commented Oct 2, 2020

With MSigDB v7.2, SCSig was promoted to C8, so it is now included in msigdbr.

@igordot igordot closed this as completed Oct 2, 2020
@kokitsuyuzaki
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Thanks @igordot! Great!!!

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