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question #11

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mannekim opened this issue Sep 26, 2022 · 1 comment
Closed

question #11

mannekim opened this issue Sep 26, 2022 · 1 comment

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@mannekim
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Hi, this is not really an issue but more of a question.
For the normalized counts ouput, is it in RPKM?
@igordot
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igordot commented Sep 26, 2022

The normalized counts (counts.normalized.csv or counts.normalized.xlsx) are scaled by size factors. This is the standard DESeq2 normalization. FPKMs are available as well (counts.fpkm.csv or counts.fpkm.xlsx).

@igordot igordot closed this as completed Sep 26, 2022
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@igordot @mannekim