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text_2010L_blastn_002.txt
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text_2010L_blastn_002.txt
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BLASTN 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|1348400|gb|G26168|G26168 human STS
EST47274.gi|1375380|gb|G27130|G27130 human STS SHGC-32751.
(434 letters)
Database: data/sts
87,792 sequences; 31,998,854 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1348400|gb|G26168|G26168 human STS EST47274. >gi|1375380|gb|... 718 0.0
gi|6121436|gb|G56117.1|G56117 SHGC-101583 Human Homo sapiens ST... 34 0.65
gi|4632200|dbj|AU047565.1|AU047565 Rattus norvegicus, OTSUKA cl... 34 0.65
gi|3249175|gb|G38401|G38401 SHGC-57345 Human Homo sapiens STS g... 34 0.65
gi|605557|gb|L31312|HUMUT937B Human STS UT937, 3' primer bind. 34 0.65
gi|720383|gb|G03425|G03425 human STS WI-5868. 34 0.65
gi|859592|gb|G06347|G06347 human STS WI-7005. 32 2.6
gi|6121347|gb|G56178.1|G56178 SHGC-101470 Human Homo sapiens ST... 32 2.6
gi|1233216|emb|Z51916|HSA082WB5 H.sapiens (D1S2890) DNA segment... 32 2.6
gi|1232198|emb|Z50898|HS038XD8 H.sapiens (D18S1106) DNA segment... 32 2.6
gi|1348143|gb|G25911|G25911 human STS EST349382. 32 2.6
gi|6122805|gb|G57486.1|G57486 SHGC-103345 Human Homo sapiens ST... 32 2.6
gi|1396897|gb|G28178|G28178 human STS SHGC-34170. 32 2.6
gi|3893806|emb|AL034156|HSPE59A01 H.sapiens flow-sorted chromos... 32 2.6
gi|1161890|gb|G16001|G16001 human STS CHLC.GCT8D08.P11278 clone... 32 2.6
gi|1017612|gb|G11520|G11520 human STS SHGC-14676. 32 2.6
gi|1130137|gb|G14398|G14398 human STS SHGC-9310 clone pG-5191. 32 2.6
gi|5224295|gb|G52968.1|G52968 SHGC-86325 Human Homo sapiens STS... 32 2.6
gi|6123581|gb|G58262.1|G58262 SHGC-104352 Human Homo sapiens ST... 32 2.6
Database: data/sts
Posted date: Nov 26, 1999 5:52 PM
Number of letters in database: 31,998,854
Number of sequences in database: 87,792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8762
Number of Sequences: 87792
Number of extensions: 8762
Number of successful extensions: 2655
Number of sequences better than 10.0: 27
length of query: 434
length of database: 31,998,854
effective HSP length: 17
effective length of query: 417
effective length of database: 30,506,390
effective search space: 12721164630
effective search space used: 12721164630
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)