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text_2014L_blastn_001.txt
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text_2014L_blastn_001.txt
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BLASTN 2.0.14 [Jun-29-2000]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|1348916|gb|G26684|G26684 human STS
STS_D11570.gi|1375195|gb|G26945|G26945 human STS SHGC-32699.
(285 letters)
Database: data/sts
87,792 sequences; 31,998,854 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1348916|gb|G26684|G26684 human STS STS_D11570. >gi|1375195|g... 517 e-146
gi|4516686|dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA cl... 32 1.6
gi|6120827|gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens ST... 32 1.6
gi|720683|gb|G03725|G03725 human STS WI-344. 32 1.6
gi|5690111|gb|G54226.1|G54226 B124N23/SP6 Human Chromosome 12 H... 30 6.5
gi|4493307|gb|G47007.1|G47007 Z15259_1 Zebrafish AB Danio rerio... 30 6.5
gi|4491799|gb|G45508.1|G45508 Z24506_1 Zebrafish AB Danio rerio... 30 6.5
gi|6121596|gb|G56277.1|G56277 SHGC-101791 Human Homo sapiens ST... 30 6.5
gi|5222417|gb|G51240.1|G51240 SHGC-80720 Human Homo sapiens STS... 30 6.5
gi|5221977|gb|G50800.1|G50800 SHGC-83850 Human Homo sapiens STS... 30 6.5
gi|5224501|gb|G53324.1|G53324 SHGC-82315 Human Homo sapiens STS... 30 6.5
gi|4529247|gb|G48587.1|G48587 SHGC-82546 Human Homo sapiens STS... 30 6.5
gi|3359917|gb|G40708|G40708 Z8947 Zebrafish AB Danio rerio STS ... 30 6.5
gi|3359244|gb|G40035|G40035 Z13538 Zebrafish AB Danio rerio STS... 30 6.5
gi|1347715|gb|G25483|G25483 human STS EST334642. 30 6.5
gi|1244262|gb|G19475|G19475 human STS SHGC-18755. 30 6.5
gi|1232611|emb|Z51311|HS302WC9 H.sapiens (D5S2069) DNA segment ... 30 6.5
gi|1223022|gb|G18565|G18565 BMS485 cow Bos taurus STS genomic, ... 30 6.5
gi|1161779|gb|G15890|G15890 human STS CHLC.UTR_01448_M84721.P56... 30 6.5
gi|858803|gb|G05558|G05558 human STS WI-7105. 30 6.5
gi|1342455|gb|G22129|G22129 human STS WI-14200. 30 6.5
gi|1347001|gb|G24769|G24769 human STS EST129834. 30 6.5
gi|605469|gb|L31223|HUMUT821B Human STS UT821, 3' primer bind. 30 6.5
>gi|1348916|gb|G26684|G26684 human STS STS_D11570.
gb|G26945|G26945 human STS SHGC-32699.
Length = 285
Score = 517 bits (261), Expect = e-146
Identities = 285/285 (100%)
Strand = Plus / Plus
Query: 1 gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatccattcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatccctacccttnccgttggtctctntcgctgactcgaggcacctaacatccattcaca 60
Query: 61 cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnactnttgagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccaacacaggccagcgacttctggggctcagccacagacatggtttgtnactnttgagc 120
Query: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtnctggaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttctgttcctagagaatcctagaggcttgattggcccaggctgctgtntgtnctggaggc 180
Query: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttgtagcgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaagaatccctacctcctaggggtgaaaggaaatnaaaatggaaagttcttgtagcgcaa 240
Query: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcctgacatgggtagctgctcaataaatgctagtntgttatttc 285
>gi|4516686|dbj|AU026763.1|AU026763 Rattus norvegicus, OTSUKA clone,
OT33.16/752f07, microsatellite sequence, sequence tagged
site
Length = 307
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 221 ggaaagttcttgtagc 236
||||||||||||||||
Sbjct: 32 ggaaagttcttgtagc 47
>gi|6120827|gb|G55508.1|G55508 SHGC-100856 Human Homo sapiens STS
genomic, sequence tagged site
Length = 711
Score = 32.2 bits (16), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 210 gaaatnaaaatggaaagtt 228
||||| |||||||||||||
Sbjct: 588 gaaataaaaatggaaagtt 606
>gi|720683|gb|G03725|G03725 human STS WI-344.
Length = 246
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 260 ctcaataaatgctagt 275
||||||||||||||||
Sbjct: 178 ctcaataaatgctagt 163
>gi|5690111|gb|G54226.1|G54226 B124N23/SP6 Human Chromosome 12 Homo
sapiens STS genomic clone RPCI-11-B124N23 SP6, sequence
tagged site
Length = 550
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 aaaatggaaagttct 230
|||||||||||||||
Sbjct: 330 aaaatggaaagttct 344
>gi|4493307|gb|G47007.1|G47007 Z15259_1 Zebrafish AB Danio rerio STS
genomic clone Z15259 5', sequence tagged site
Length = 442
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 ttctgttcctagaga 135
|||||||||||||||
Sbjct: 384 ttctgttcctagaga 370
>gi|4491799|gb|G45508.1|G45508 Z24506_1 Zebrafish AB Danio rerio STS
genomic clone Z24506 5', sequence tagged site
Length = 272
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 ggaaagttcttgtag 235
|||||||||||||||
Sbjct: 138 ggaaagttcttgtag 124
>gi|6121596|gb|G56277.1|G56277 SHGC-101791 Human Homo sapiens STS
genomic, sequence tagged site
Length = 641
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tgctcaataaatgct 272
|||||||||||||||
Sbjct: 216 tgctcaataaatgct 202
>gi|5222417|gb|G51240.1|G51240 SHGC-80720 Human Homo sapiens STS
genomic, sequence tagged site
Length = 712
Score = 30.2 bits (15), Expect = 6.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 265 taaatgctagtntgttat 282
||||||||||| ||||||
Sbjct: 293 taaatgctagtttgttat 310
>gi|5221977|gb|G50800.1|G50800 SHGC-83850 Human Homo sapiens STS
genomic, sequence tagged site
Length = 422
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tgctcaataaatgct 272
|||||||||||||||
Sbjct: 32 tgctcaataaatgct 18
>gi|5224501|gb|G53324.1|G53324 SHGC-82315 Human Homo sapiens STS
genomic, sequence tagged site
Length = 428
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tgctcaataaatgct 272
|||||||||||||||
Sbjct: 47 tgctcaataaatgct 33
>gi|4529247|gb|G48587.1|G48587 SHGC-82546 Human Homo sapiens STS
genomic, sequence tagged site
Length = 694
Score = 30.2 bits (15), Expect = 6.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 265 taaatgctagtntgttat 282
||||||||||| ||||||
Sbjct: 292 taaatgctagtttgttat 309
>gi|3359917|gb|G40708|G40708 Z8947 Zebrafish AB Danio rerio STS
genomic
Length = 549
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 aacatccattcacac 61
|||||||||||||||
Sbjct: 479 aacatccattcacac 465
>gi|3359244|gb|G40035|G40035 Z13538 Zebrafish AB Danio rerio STS
genomic
Length = 536
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 ttctgttcctagaga 135
|||||||||||||||
Sbjct: 433 ttctgttcctagaga 419
>gi|1347715|gb|G25483|G25483 human STS EST334642.
Length = 407
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ctaacatccattcac 59
|||||||||||||||
Sbjct: 389 ctaacatccattcac 403
>gi|1244262|gb|G19475|G19475 human STS SHGC-18755.
Length = 400
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tgctcaataaatgct 272
|||||||||||||||
Sbjct: 324 tgctcaataaatgct 310
>gi|1232611|emb|Z51311|HS302WC9 H.sapiens (D5S2069) DNA segment
containing (CA) repeat; clone AFM302wc9; single read,
sequence tagged site [Homo sapiens]
Length = 374
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 acagacatggtttgt 109
|||||||||||||||
Sbjct: 246 acagacatggtttgt 260
>gi|1223022|gb|G18565|G18565 BMS485 cow Bos taurus STS genomic,
sequence tagged site [Bos taurus]
Length = 181
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 260 ctcaataaatgctag 274
|||||||||||||||
Sbjct: 145 ctcaataaatgctag 159
>gi|1161779|gb|G15890|G15890 human STS CHLC.UTR_01448_M84721.P56085
clone UTR_01448_M84721.
Length = 729
Score = 30.2 bits (15), Expect = 6.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 253 gtagctgctcaataaatgc 271
|||| ||||||||||||||
Sbjct: 698 gtaggtgctcaataaatgc 716
>gi|858803|gb|G05558|G05558 human STS WI-7105.
Length = 735
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 222 gaaagttcttgtagc 236
|||||||||||||||
Sbjct: 543 gaaagttcttgtagc 529
>gi|1342455|gb|G22129|G22129 human STS WI-14200.
Length = 373
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tgctcaataaatgct 272
|||||||||||||||
Sbjct: 33 tgctcaataaatgct 19
>gi|1347001|gb|G24769|G24769 human STS EST129834.
Length = 306
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 tggaaagttcttgta 234
|||||||||||||||
Sbjct: 144 tggaaagttcttgta 158
>gi|605469|gb|L31223|HUMUT821B Human STS UT821, 3' primer bind.
Length = 127
Score = 30.2 bits (15), Expect = 6.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 acagacatggtttgt 109
|||||||||||||||
Sbjct: 106 acagacatggtttgt 92
Database: data/sts
Posted date: Feb 11, 2000 2:37 PM
Number of letters in database: 31,998,854
Number of sequences in database: 87,792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3835
Number of Sequences: 87792
Number of extensions: 3835
Number of successful extensions: 301
Number of sequences better than 10.0: 24
length of query: 285
length of database: 31,998,854
effective HSP length: 17
effective length of query: 268
effective length of database: 30,506,390
effective search space: 8175712520
effective search space used: 8175712520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)