Add bokeh statistics operations, elements and plots #1985
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Docstrings, element references and unit tests left, should be able to finish that up in the morning. Compositor now handles everything, and I'm very happy with it overall. It did touch an awful lot of files though. |
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@jlstevens This is now ready for review. I've added element notebooks for both new Elements along with a new demo, added docstrings to the operations and added unit tests for transferring options, for the statistics elements themselves and for the compositing of the statistics elements. Should get a very healthy boost in coverage overall. |
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Almost a 1% coverage increase! Ready for final review and merge whenever. |
holoviews/element/stats.py
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| from .chart import Chart, Scatter | ||
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| class _StatisticsElement(Chart): |
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I would still prefer to have this called StatisticalElement which matches the name used in the unit testing class.
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Sure, don't want that appearing in the top-level namespace though.
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Can't we just set __all__ so if it is used it has to be explicitly imported?
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I'm now filtering abstract classes from hv.element. Works fine.
holoviews/ipython/display_hooks.py
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| if type(element) not in Store.registry[backend]: | ||
| eltype = type(element) | ||
| if (eltype not in Store.registry[backend] and | ||
| all(eltype.__name__ != d.pattern for d in Compositor.definitions)): |
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How come we didn't need this before when the compositor was used?
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I can actually remove this again, it was needed when I didn't define plotting class stubs for these elements, which I then restored because I realized options wouldn't work correctly without them.
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Ok, removing this would be good in that case.
holoviews/plotting/renderer.py
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| if any(len(c._pattern_spec) == 1 for c in Compositor.definitions): | ||
| obj = obj.map(lambda obj: Compositor.collapse_element(obj, mode='data', | ||
| backend=backend), | ||
| [Element]) |
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Maybe this stuff should be provided by Compositor itself? (i.e CompositeOverlay vs Element)
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I also think this should be done by compositor as you are accessing an underscore attribute, namely _pattern_spec.
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Maybe something like Compositor.map(obj, backend)?
| new_ids = tuple(overlay.traverse(lambda x: id(x), [spec_fn])) | ||
| if new_ids == prev_ids: | ||
| return overlay | ||
| prev_ids = new_ids |
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I am happy that we have StatisticalCompositorTest but I still don't yet have a mental model of how this code extends how Compositor works.
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I'll quickly describe it:
a) Compositors can now be applied to individual elements not just overlays.
b) Compositors are applied iteratively until there are no more matches in the compositor definitions (needed to reduce Overlays with multiple elements that should be transformed)
c) If transfer_options is true, the options are transferred from the input element to the output element. Additionally plot options that also apply to the operation are transferred there.
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Ok. I think this is all stuff to demonstrate with examples when we finally expose Compositor as a useful thing to users.
| "not %s." % (group, dims)) | ||
| dimensions[group] = [d if isinstance(d, Dimension) else Dimension(d) for d in dims] | ||
| return dimensions | ||
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Just checking that this function is confined to core....
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Good thing to check but I'm fairly certain.
holoviews/core/options.py
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| The group identifier for the output of this particular compositor""") | ||
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| kwargs = param.Dict(doc=""" | ||
| Optional set of parameters to pass to the operation.""") | ||
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| transfer_options = param.Boolean(default=False, doc=""" | ||
| Whether to transfer the options from the input to the output.""") | ||
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I think this is fine but maybe the part that transfers parameters (i.e plot options) to the operation should be a separate flag. Maybe transfer_parameters? or propagate_params?
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After a few more comments above are addressed, I'm happy to merge. |
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Okay all comments addressed, just waiting on tests now. |
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Tests have passed. Merging! |
This PR will replace the seaborn interface with a set of statistical elements, operations and plots which will all work together. For now it's very much a WIP since there's still some groundwork to be laid, but it's a good start with the basic functionality in place for Distribution and Bivariate elements and corresponding operations.
Demo notebook can be seen here