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Version 2.1.3

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@bqminh bqminh released this 21 Apr 04:51
· 859 commits to master since this release
v2.1.3
3d31be9

New features:

  • Compute rootstrap supports output to .rootstrap.nex file when using nonreversible models with bootstrap.
  • New option --rootstrap to compute rootstrap values on a user-defined tree (-t) from a set of (bootstrap) trees. Works with unrooted trees by providing outgroup (-o option).
  • New option --root-test to perform topology tests on rooting positions across all branches.
  • Include series of new Q matrices from QMaker paper into ModelFinder by default.
  • Update the latest LSD2 (commit 4a354eb).
  • Print site of output alignment in the original order when partitioning.
  • Handle -st NT2AA for partitioned models properly.

Bugfixes:

  • Handling of --tree-fix option.
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