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enriquea or danielgoldstein - would you be generous to spare some time for a Zoom call to help me fix this? I will be happy to pay you for your time and help.
Thanks,
-Ben
(Dec 13, 2023 at 19:20) danking said:
We don’t support this kind of initialization. Use ipython or python as described here: Hail | Your First Hail Query Do not use pyspark directly.
In the future, please always include the full stack trace.
(Dec 14, 2023 at 13:05) race_admin said:
danking - thank you for your response. Please see the full stack trace with the suggested way.
danking - please note that the errors in my last and first posts are the same.
The reason why I didn’t use ipython first is that the sheer length of the error log clears out most of the initial commands and error logs from the terminal window.
Thanks,
-Ben
(Dec 14, 2023 at 14:24) race_admin said:
For posterity, let me share how I resolved the issue. Since this is not already mentioned in the get-started documentation.
Besides install Spark and Hadoop on the local machine, I had to do the following.
Ensure Spark is shutdown by calling $SPARK_HOME/sbin/stop-all.sh
hadoop namenode -config configures the Hadoop’s master node on the local machine.
hadoop namenode will start the Hadoop instance on the local machine.
You should then see a server listening in on the 9000 port. Leave it running in that terminal window.
Run the hail test command from another terminal window in ipython or python. You should then see something like the following.
Note
The following post was exported from discuss.hail.is, a forum for asking questions about Hail which has since been deprecated.
(Dec 10, 2023 at 19:44) race_admin said:
I tried several things to get this to work locally on a m1 Mac but I keep running into the max-recursion error when trying to initialise hl.init(sc).
Has anyone saved this problem?
The steps I do are as follows:
It fails with the above-shown error.
(Dec 13, 2023 at 13:18) race_admin said:
enriquea or danielgoldstein - would you be generous to spare some time for a Zoom call to help me fix this? I will be happy to pay you for your time and help.
Thanks,
-Ben
(Dec 13, 2023 at 19:20) danking said:
We don’t support this kind of initialization. Use
ipython
orpython
as described here: Hail | Your First Hail Query Do not use pyspark directly.In the future, please always include the full stack trace.
(Dec 14, 2023 at 13:05) race_admin said:
danking - thank you for your response. Please see the full stack trace with the suggested way.
test_hail.log contents are below.
(Dec 14, 2023 at 13:08) race_admin said:
… contd
The following error repeats several times and then ends with the last line.
(Dec 14, 2023 at 13:12) race_admin said:
danking - please note that the errors in my last and first posts are the same.
The reason why I didn’t use ipython first is that the sheer length of the error log clears out most of the initial commands and error logs from the terminal window.
Thanks,
-Ben
(Dec 14, 2023 at 14:24) race_admin said:
For posterity, let me share how I resolved the issue. Since this is not already mentioned in the get-started documentation.
Besides install Spark and Hadoop on the local machine, I had to do the following.
Ensure Spark is shutdown by calling
$SPARK_HOME/sbin/stop-all.sh
hadoop namenode -config
configures the Hadoop’s master node on the local machine.hadoop namenode
will start the Hadoop instance on the local machine.You should then see a server listening in on the 9000 port. Leave it running in that terminal window.
Run the hail test command from another terminal window in
ipython
orpython
. You should then see something like the following.Good luck.
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