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Output: Adhere to output specification for Identification challenge
This BED file contains single-nucleotide position of poly(A) sites identified by the tool.
Fields:
chrom - the name of the chromosome
chromStart - the starting position of the feature in the chromosome
chromEnd - the ending position of the feature in the chromosome; as identified PAS are single-nucleotide, the ending position is the same as starting position
name - defines the name of the identified poly(A) site
score - not used, leave as "."
strand - defines the strand; either "." (=no strand) or "+" or "-".
Output: Adhere to output specification for quantification challenge
This BED file contains positions of unique poly(A) sites with TPM values for each identified site in the score column.
chrom - the name of the chromosome
chromStart - the starting position of the feature in the chromosome
chromEnd - the ending position of the feature in the chromosome; as identified PAS are single-nucleotide, the ending position is the same as starting position
name - defines the name of the identified poly(A) site
score - TPM value for the identified site
strand - defines the strand; either "." (=no strand) or "+" or "-".
Output: Adhere to output specification for differential usage challenge
This TSV file contains two columns:
gene ID
significance of differential PAS usage
Column names should not be added to the file.
The text was updated successfully, but these errors were encountered:
WHAT
Write execution workflow for DaPars2. Use the provided small files for testing (running the workflow on real data is a different issue).
CHECKLIST
OUTPUTS (see specification):
Output: Adhere to output specification for Identification challenge
Output: Adhere to output specification for quantification challenge
Output: Adhere to output specification for differential usage challenge
The text was updated successfully, but these errors were encountered: