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MD flag in SAM file #5

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vineeth-s opened this issue Aug 19, 2015 · 1 comment
Closed

MD flag in SAM file #5

vineeth-s opened this issue Aug 19, 2015 · 1 comment
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enhancement

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@vineeth-s
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To use graphmap as part of a workflow, it'd be great to have the MD flag in the SAM file without having to run samtools calmd as an extra step
@isovic
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isovic commented Apr 15, 2016

Hi!
This finally got implemented in the latest release (v0.3.0) :-)
Still needs thorough testing though.
Could you give it a shot? If yes, let me know if everything works fine so I can close this issue.

Best regards,
Ivan.

@samhunter samhunter mentioned this issue Aug 12, 2016
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@isovic isovic closed this as completed Oct 12, 2016
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@vineeth-s @andreas-wilm @isovic