Error when executing tm.py

[sushi2k]

Hi all,

thanks for sharing this nice tool. I just wanted to explore the sample but getting an error

➜  pytm git:(master) ✗ ./tm.py --dfd | dot -Tpng -o sample1.png
2019-03-31 07:24:45.271 dot[27759:12821403] +[__NSCFConstantString length]: unrecognized selector sent to class 0x7fff95b4a8c0
2019-03-31 07:24:45.272 dot[27759:12821403] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '+[__NSCFConstantString length]: unrecognized selector sent to class 0x7fff95b4a8c0'
*** First throw call stack:
(
	0   CoreFoundation                      0x00007fff3df1743d __exceptionPreprocess + 256
	1   libobjc.A.dylib                     0x00007fff69e25720 objc_exception_throw + 48
	2   CoreFoundation                      0x00007fff3df941a5 __CFExceptionProem + 0
	3   CoreFoundation                      0x00007fff3deb6ad0 ___forwarding___ + 1486
	4   CoreFoundation                      0x00007fff3deb6478 _CF_forwarding_prep_0 + 120
	5   CoreFoundation                      0x00007fff3de47f54 CFStringCompareWithOptionsAndLocale + 72
	6   ImageIO                             0x00007fff409b5367 _ZN17IIO_ReaderHandler15readerForUTTypeEPK10__CFString + 53
	7   ImageIO                             0x00007fff4098d527 _ZN14IIOImageSource14extractOptionsEP13IIODictionary + 183
	8   ImageIO                             0x00007fff409ba2e6 _ZN14IIOImageSourceC2EP14CGDataProviderP13IIODictionary + 72
	9   ImageIO                             0x00007fff409ba1bb CGImageSourceCreateWithDataProvider + 172
	10  libgvplugin_quartz.6.dylib          0x0000000107cfcc54 quartz_loadimage_quartz + 224
	11  libgvc.6.dylib                      0x0000000107c59781 gvloadimage + 269
	12  libgvc.6.dylib                      0x0000000107c587e0 gvrender_usershape + 955
	13  libgvc.6.dylib                      0x0000000107c8662e poly_gencode + 2129
	14  libgvc.6.dylib                      0x0000000107c92b7b emit_node + 1030
	15  libgvc.6.dylib                      0x0000000107c91805 emit_graph + 4769
	16  libgvc.6.dylib                      0x0000000107c96d0d gvRenderJobs + 4911
	17  dot                                 0x0000000107c4fd62 main + 697
	18  libdyld.dylib                       0x00007fff6aef3085 start + 1
)
libc++abi.dylib: terminating with uncaught exception of type NSException
[1]    27758 done       ./tm.py --dfd |
       27759 abort      dot -Tpng -o sample1.png

I installed graphviz via brew, using macOS 10.14 and Python 3.7.3.

[shambho]

@sushi2k This looks like an error in graphviz package Sven. Can you try reinstalling graphviz with the following command and let me know if it works?

brew install graphviz --with-pango

Reference: y13i/sgviz#10

[sushi2k]

Thanks. But when executing this I only got an error (same happens with "install", I also removed it and tried to reinstall again, I executed brew update and also brew cleanup)

$ brew reinstall graphviz --with-pango
Usage: brew reinstall [options] formula

Uninstall and then install formula (with existing and any appended install
options).

Unless HOMEBREW_NO_INSTALL_CLEANUP is set, brew cleanup will be run for the
reinstalled formulae or, every 30 days, for all formulae.

    -d, --debug                      If brewing fails, open an interactive
                                     debugging session with access to IRB or a
                                     shell inside the temporary build directory
    -s, --build-from-source          Compile formula from source even if a
                                     bottle is available.
        --force-bottle               Install from a bottle if it exists for the
                                     current or newest version of macOS, even if
                                     it would not normally be used for
                                     installation.
        --keep-tmp                   Don't delete the temporary files created
                                     during installation.
    -f, --force                      Install without checking for previously
                                     installed keg-only or non-migrated
                                     versions.
    -v, --verbose                    Print the verification and postinstall
                                     steps.
        --display-times              Print install times for each formula at the
                                     end of the run.
    -h, --help                       Show this message.
Error: invalid option: --with-pango

I was installing now pango and librsvg also via brew but no change.

$ brew install pango librsvg

Seems --with-pango is no longer supported in the formula of graphviz. BurntSushi/erd#48

Any idea how to get it work?

[shambho]

hmm, I don't have a Mac to test what you're seeing unfortunately. @izar how did you install Graphviz on your machine?

[izar]

Are you using Quartz?

I am running on 10.14.4 too, no Quartz.

graphviz: stable 2.40.1 (bottled), HEAD
Graph visualization software from AT&T and Bell Labs
https://www.graphviz.org/
/usr/local/Cellar/graphviz/HEAD-3cd810d (532 files, 12.2MB) *
Built from source on 2019-01-11 at 13:31:46 with: --with-app --with-gts --with-pango
From: https://github.com/Homebrew/homebrew-core/blob/master/Formula/graphviz.rb
==> Dependencies
Build: pkg-config ✔
Required: gd ✔, gts ✔, libpng ✔, libtool ✔
==> Options
--HEAD
Install HEAD version

[sushi2k]

So I had Xquartz installed and removed it as described here: https://gist.github.com/pwnsdx/d127873e24cef159d4d603accaf37ee4

I reinstalled now graphviz via brew but still same error. I can also not install it with the flags as mentioned by you, as I just get an error as they are not part of the formula anymore (see also BurntSushi/erd#48)

➜  pytm git:(master) ✗ brew reinstall graphviz --with-app --with-gts --with-pango
Usage: brew reinstall [options] formula

Uninstall and then install formula (with existing and any appended install
options).

Unless HOMEBREW_NO_INSTALL_CLEANUP is set, brew cleanup will be run for the
reinstalled formulae or, every 30 days, for all formulae.

    -d, --debug                      If brewing fails, open an interactive
                                     debugging session with access to IRB or a
                                     shell inside the temporary build directory
    -s, --build-from-source          Compile formula from source even if a
                                     bottle is available.
        --force-bottle               Install from a bottle if it exists for the
                                     current or newest version of macOS, even if
                                     it would not normally be used for
                                     installation.
        --keep-tmp                   Don't delete the temporary files created
                                     during installation.
    -f, --force                      Install without checking for previously
                                     installed keg-only or non-migrated
                                     versions.
    -v, --verbose                    Print the verification and postinstall
                                     steps.
        --display-times              Print install times for each formula at the
                                     end of the run.
    -h, --help                       Show this message.
Error: invalid option: --with-app

[izar]

I'm sorry, but that's the extent of my knowledge regarding graphviz installation on a Mac. Did you try installing with no flags, just play brew install graphviz ?

[sushi2k]

yes, that's the only way how I can install it, but then I am getting this error

➜  pytm git:(master) ✗ ./tm.py --dfd | dot -Tpng -o sample1.png
2019-04-03 07:22:18.988 dot[8301:55469] +[__NSCFConstantString length]: unrecognized selector sent to class 0x7fff837a48c0
2019-04-03 07:22:18.988 dot[8301:55469] *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: '+[__NSCFConstantString length]: unrecognized selector sent to class 0x7fff837a48c0'
*** First throw call stack:
(
	0   CoreFoundation                      0x00007fff2bb7143d __exceptionPreprocess + 256
	1   libobjc.A.dylib                     0x00007fff57a83720 objc_exception_throw + 48
	2   CoreFoundation                      0x00007fff2bbee1a5 __CFExceptionProem + 0
	3   CoreFoundation                      0x00007fff2bb10ad0 ___forwarding___ + 1486
	4   CoreFoundation                      0x00007fff2bb10478 _CF_forwarding_prep_0 + 120
	5   CoreFoundation                      0x00007fff2baa1f54 CFStringCompareWithOptionsAndLocale + 72
	6   ImageIO                             0x00007fff2e60f367 _ZN17IIO_ReaderHandler15readerForUTTypeEPK10__CFString + 53
	7   ImageIO                             0x00007fff2e5e7527 _ZN14IIOImageSource14extractOptionsEP13IIODictionary + 183
	8   ImageIO                             0x00007fff2e6142e6 _ZN14IIOImageSourceC2EP14CGDataProviderP13IIODictionary + 72
	9   ImageIO                             0x00007fff2e6141bb CGImageSourceCreateWithDataProvider + 172
	10  libgvplugin_quartz.6.dylib          0x000000010accec54 quartz_loadimage_quartz + 224
	11  libgvc.6.dylib                      0x000000010ac0c781 gvloadimage + 269
	12  libgvc.6.dylib                      0x000000010ac0b7e0 gvrender_usershape + 955
	13  libgvc.6.dylib                      0x000000010ac3962e poly_gencode + 2129
	14  libgvc.6.dylib                      0x000000010ac45b7b emit_node + 1030
	15  libgvc.6.dylib                      0x000000010ac44805 emit_graph + 4769
	16  libgvc.6.dylib                      0x000000010ac49d0d gvRenderJobs + 4911
	17  dot                                 0x000000010ac04d62 main + 697
	18  libdyld.dylib                       0x00007fff58b51085 start + 1
	19  ???                                 0x0000000000000004 0x0 + 4
)
libc++abi.dylib: terminating with uncaught exception of type NSException
[1]    8300 done       ./tm.py --dfd |
       8301 abort      dot -Tpng -o sample1.png

[izar]

Yep - sorry, but it appears to be a graphviz problem. Not sure what to tell you here.

[sushi2k]

Thanks for your help. Once i figure it out, I will share it here

[anshumanbh]

@sushi2k @shambho This fixed it for me:
parrt/dtreeviz#33 (comment)

[sushi2k]

Awesome. Thanks @anshumanbh that worked :-)