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About the keyword for searching from PubMed #7

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Hyfred opened this issue Jan 8, 2020 · 1 comment
Closed

About the keyword for searching from PubMed #7

Hyfred opened this issue Jan 8, 2020 · 1 comment

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@Hyfred
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Hyfred commented Jan 8, 2020

Thanks for your contribution!
I have one question for the PubRunner.I notice that your tool is good for downloading articles. However, when I wanna only download articles within a specific concept such as cancer, I don't know where to start. Can I ask if you have any suggeston regarding this issue?
Thank you very much. I am really appreciated your reply.

@jakelever
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Hi, PubRunner doesn't currently support downloading articles using keywords. The NCBI Entrez EDirect API does let you runs queries and get the abstracts in XML format. You might want to check out the Biopython interface for this: https://biopython.org/DIST/docs/api/Bio.Entrez-module.html. Hope that helps.

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