Remove labelling UI (#72)

* Remove UI elements that now live in ipyannotations

* Update distributed queue to use sqlmodel

* Fix bug with in-memory queue

* Remove display functionality from base widget

* Update the tests

* Remove the in-memory queue using deque

- the database queue with in-memory sqlite serves
  the same purpose
- tests showed it was actually the same speed

* Refactor db_queue:

- use sqlmodel session
- remove old sqlalchemy code

* Use try-except for model fitting issues

* Set line length to 88 for whole project

* Remove more dead code, and improve testing

* Add & test distributed functionality to base widget

since DBqueue is used in the base widget, there is
no need to keep using the distributed version

* Fix linting and type issues

* Update versions of python in CI test suite

* Add codetiming to the dependencies

* Create a separate version file

* Only register undo function if possible

* Edit docs to reflect new package

* Remove UI elements that now live in ipyannotations

* Update distributed queue to use sqlmodel

* Fix bug with in-memory queue

* Remove display functionality from base widget

* Update the tests

* Remove the in-memory queue using deque

- the database queue with in-memory sqlite serves
  the same purpose
- tests showed it was actually the same speed

* Refactor db_queue:

- use sqlmodel session
- remove old sqlalchemy code

* Use try-except for model fitting issues

* Set line length to 88 for whole project

* Remove more dead code, and improve testing

* Add & test distributed functionality to base widget

since DBqueue is used in the base widget, there is
no need to keep using the distributed version

* Fix linting and type issues

* Update versions of python in CI test suite

* Add codetiming to the dependencies

* Create a separate version file

* Only register undo function if possible

* Edit docs to reflect new package

* Configure test ver to target right file

* Ignore flake8 warning for binary operators

* Move version *back* to being statically defined

Flit was attempting to dynamically load the version info,
but without all dependencies this lead to import errors.

* Converting a few doc notebooks to markdown.

* Update the API docs to the latest API changes

* Remove nbsphinx JS (it duplicates widgets)

* Sphinx config changes for autodoc & intersphinx

- Intersphinx is now aware of ipyannotations
- autodoc now documents class init signatures

* Convert examples to markdown (was notebooks)

* Move docker compose example to new API

* Move rest of documentation to MyST

* Remove notebook tests from CI

Notebooks are no longer used in the docs.

* Refactor where some of the code lives

* Remove unused dependencies

* Remove unused example

* Make documentation clearer.

- add an example on the index home page
- incorporate feedback on language

.github/workflows/build.yml

@@ -1,4 +1,4 @@
-name: Package build and publishing
+name: Build
 
 on:
   push:
@@ -7,8 +7,6 @@ on:
     tags:
       - '*'
   pull_request:
-    branches:
-      - main
 
 jobs:
   build:
@@ -28,7 +26,7 @@ jobs:
     - name: Set testing variables
       if: "!startsWith(github.event.ref, 'refs/tags')"
       run: |
-        testver src/superintendent/
+        testver src/superintendent
         echo "FLIT_INDEX_URL=https://test.pypi.org/legacy/" >> $GITHUB_ENV
         echo "FLIT_PASSWORD=${{ secrets.test_pypi_secret }}" >> $GITHUB_ENV
     - name: Build

.github/workflows/test.yml

@@ -1,7 +1,8 @@
-name: Unit tests and linting
+name: Tests
 
 on:
   push:
+  pull_request:
   schedule:
     - cron: "0 15 * * 5"
 
@@ -45,21 +46,3 @@ jobs:
       run: python -m coveralls
       env:
         COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
-  run-examples:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        python-version: ['3.7', '3.8', '3.9', '3.10']
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v1
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install -qq --upgrade pip flit
-        flit install --symlink --extras test,examples
-    - name: Run notebooks
-      run: |
-        find docs -maxdepth 2 -name '*.ipynb' | xargs jupyter nbconvert --to notebook --execute

.pre-commit-config.yaml

@@ -1,17 +1,20 @@
 repos:
--   repo: https://github.com/pre-commit/mirrors-isort
-    rev: v4.3.21  # Use the revision sha / tag you want to point at
+-   repo: https://github.com/pycqa/isort
+    rev: '5.8.0'  # Use the revision sha / tag you want to point at
     hooks:
     - id: isort
--   repo: https://github.com/ambv/black
-    rev: 19.3b0
+      exclude: ^tests/
+-   repo: https://github.com/psf/black
+    rev: '21.8b0'
     hooks:
     - id: black
+      language_version: python3
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v2.3.0
+    rev: 'v2.3.0'
     hooks:
     - id: flake8
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v0.730  # Use the sha / tag you want to point at
+    rev: ''
     hooks:
-    -   id: mypy
+    - id: mypy
+      exclude: ^tests/|docs