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DESCRIPTION
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DESCRIPTION
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Package: metabolyseR
Title: Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data
Version: 0.14.10
Authors@R: person("Jasen", "Finch", email = "jsf9@aber.ac.uk", role = c("aut", "cre"))
Description: A tool kit for pre-treatment, modelling, feature selection and correlation analyses of metabolomics data.
URL: https://jasenfinch.github.io/metabolyseR
BugReports: https://github.com/jasenfinch/metabolyseR/issues
biocViews: Metabolomics
Depends: R (>= 3.4.0)
Imports: Hmisc,
dplyr,
missForest,
randomForest,
stringr,
tibble,
tidyr,
methods,
ggplot2,
ggthemes,
ggdendro,
purrr,
doFuture,
e1071,
forestControl,
crayon,
yaml,
cli,
lubridate,
ggrepel,
patchwork,
yardstick,
broom,
rlang,
tidyselect,
magrittr,
furrr,
future
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Suggests: knitr,
rmarkdown,
readr,
testthat,
metaboData,
prettydoc,
covr,
kableExtra
Collate: allClasses.R
analysis-accessors.R
aggregate.R
analysisData.R
correction.R
correlations.R
impute.R
info.R
join.R
keep.R
mds.R
metabolyse.R
metabolyseR.R
modelling.R
modellingPlots.R
nlda.R
occupancy.R
parameters.R
plotExplanatoryHeatmap.R
plotFeature.R
plotLDA.R
plotOccupancy.R
plotPCA.R
plotRSD.R
plotSupervisedRF.R
plotTIC.R
plotting.R
plotUnsupervisedRF.R
pre-treatment.R
predict.R
QC.R
reexports.R
remove.R
randomForest.R
rsd.R
roc.R
show-method.R
split.R
transform.R
tune.R
univariate.R
modelling-accessors.R
VignetteBuilder: knitr
Remotes: jasenfinch/missForest