git clean-up of untracked files. Re-run CH1 analyses

Signed-off-by: Jonathan A. Whiteley <jonathan.whiteley@mail.mcgill.ca>
jawhiteley · Jan 21, 2012 · 0d91dc7 · 0d91dc7
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Showing 40 changed files with 27 additions and 13,544 deletions.
diff --git a/data/SECC_Decomposition.csv → data/SECC_decomposition.csv b/data/SECC_Decomposition.csv → data/SECC_decomposition.csv
diff --git a/graphs/Figure - ARA.m - CxP.eps b/graphs/Figure - ARA.m - CxP.eps
diff --git a/graphs/Figure - Cells.m - CxP.eps b/graphs/Figure - Cells.m - CxP.eps
diff --git a/graphs/Figure - Decomp.asq - CxP.eps b/graphs/Figure - Decomp.asq - CxP.eps
diff --git a/graphs/Figure - H2O - CxP.eps b/graphs/Figure - H2O - CxP.eps
diff --git a/graphs/Figure - H2O - FxP.eps b/graphs/Figure - H2O - FxP.eps
diff --git a/graphs/Results - ARA.m - 1.pdf b/graphs/Results - ARA.m - 1.pdf
diff --git a/graphs/Results - ARA.m - 123.pdf b/graphs/Results - ARA.m - 123.pdf
diff --git a/graphs/Results - ARA.m - 2.pdf b/graphs/Results - ARA.m - 2.pdf
diff --git a/graphs/Results - ARA.m - 3.pdf b/graphs/Results - ARA.m - 3.pdf
diff --git a/graphs/Results - Cells.m - 1.pdf b/graphs/Results - Cells.m - 1.pdf
diff --git a/graphs/Results - Cells.m - 123.pdf b/graphs/Results - Cells.m - 123.pdf
diff --git a/graphs/Results - Cells.m - 2.pdf b/graphs/Results - Cells.m - 2.pdf
diff --git a/graphs/Results - Cells.m - 3.pdf b/graphs/Results - Cells.m - 3.pdf
diff --git a/graphs/Results - H2O - 1.pdf b/graphs/Results - H2O - 1.pdf
diff --git a/graphs/Results - H2O - 123.pdf b/graphs/Results - H2O - 123.pdf
diff --git a/graphs/Results - H2O - 2.pdf b/graphs/Results - H2O - 2.pdf
diff --git a/graphs/Results - H2O - 3.pdf b/graphs/Results - H2O - 3.pdf
diff --git a/graphs/Results - Hcells.m - 1.pdf b/graphs/Results - Hcells.m - 1.pdf
diff --git a/graphs/Results - Hcells.m - 123.pdf b/graphs/Results - Hcells.m - 123.pdf
diff --git a/graphs/Results - Hcells.m - 2.pdf b/graphs/Results - Hcells.m - 2.pdf
diff --git a/graphs/Results - Hcells.m - 3.pdf b/graphs/Results - Hcells.m - 3.pdf
diff --git a/output/Results - ARA.m - 1.txt b/output/Results - ARA.m - 1.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:48 2012
+Fri Jan 20 21:38:42 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - ARA.m - 123.txt b/output/Results - ARA.m - 123.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:57 2012
+Fri Jan 20 21:38:55 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - ARA.m - 2.txt b/output/Results - ARA.m - 2.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:51 2012
+Fri Jan 20 21:38:46 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - ARA.m - 3.txt b/output/Results - ARA.m - 3.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:54 2012
+Fri Jan 20 21:38:51 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 1.txt b/output/Results - Cells.m - 1.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Fri Jan 20 21:04:11 2012
+Fri Jan 20 21:39:17 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 123.txt b/output/Results - Cells.m - 123.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Fri Jan 20 21:04:19 2012
+Fri Jan 20 21:39:29 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 2.txt b/output/Results - Cells.m - 2.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Fri Jan 20 21:04:14 2012
+Fri Jan 20 21:39:21 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - Cells.m - 3.txt b/output/Results - Cells.m - 3.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, Outer 
 
-Fri Jan 20 21:04:17 2012
+Fri Jan 20 21:39:25 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - H2O - 1.txt b/output/Results - H2O - 1.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:02 2012
+Fri Jan 20 21:37:48 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - H2O - 123.txt b/output/Results - H2O - 123.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:11 2012
+Fri Jan 20 21:38:00 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - H2O - 2.txt b/output/Results - H2O - 2.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:05 2012
+Fri Jan 20 21:37:52 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results - H2O - 3.txt b/output/Results - H2O - 3.txt
@@ -5,7 +5,7 @@ Chamber:       Ambient, Full Chamber
 Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated 
 Patches:       Inner, other, Outer 
 
-Fri Jan 20 21:03:08 2012
+Fri Jan 20 21:37:56 2012
 
 ================================================================
 ================  Patch scale Results  =========================

diff --git a/output/Results-ARA.m~Cells.m-123.txt b/output/Results-ARA.m~Cells.m-123.txt
@@ -6,7 +6,7 @@ Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated
 Patches:       Inner, Outer
 
 R version 2.12.0 (2010-10-15)
-Fri Jan 20 21:06:37 2012
+Fri Jan 20 21:42:30 2012
 ================================================================
 
 Analysis of Variance Table

diff --git a/output/Results-ARA.m~Cells.m-RegTrees-123.txt b/output/Results-ARA.m~Cells.m-RegTrees-123.txt
@@ -7,7 +7,7 @@ Fragmentation: Continuous, Full Corridors, Pseudo-Corridors, Isolated
 Patches:       Inner, Outer
 
 R version 2.12.0 (2010-10-15)
-Fri Jan 20 21:08:58 2012
+Fri Jan 20 21:45:27 2012
 ================================================================
 
 n= 384 
@@ -41,15 +41,15 @@ rpart(formula = Y.main, data = SECCa, control = rpc)
   n= 384 
 
           CP nsplit rel error    xerror       xstd
-1 0.15197466      0 1.0000000 1.0050118 0.12010200
-2 0.08248488      2 0.6960507 0.7564794 0.09975373
-3 0.05689327      3 0.6135658 0.7121006 0.09078257
-4 0.04186096      4 0.5566725 0.6964090 0.08818938
-5 0.03795664      5 0.5148116 0.6790802 0.09580130
-6 0.03525995      7 0.4388983 0.6734161 0.09424700
-7 0.02116115      8 0.4036383 0.6625364 0.09652673
-8 0.01860967      9 0.3824772 0.6640299 0.08851092
-9 0.01500000     10 0.3638675 0.6060530 0.07328475
+1 0.15197466      0 1.0000000 1.0034844 0.12033771
+2 0.08248488      2 0.6960507 0.7931318 0.09940170
+3 0.05689327      3 0.6135658 0.7957637 0.09273151
+4 0.04186096      4 0.5566725 0.7155715 0.08721681
+5 0.03795664      5 0.5148116 0.6517531 0.07994449
+6 0.03525995      7 0.4388983 0.6371876 0.07921078
+7 0.02116115      8 0.4036383 0.6112012 0.07254209
+8 0.01860967      9 0.3824772 0.6297426 0.07171800
+9 0.01500000     10 0.3638675 0.6504392 0.07900803
 
 Node number 1: 384 observations,    complexity param=0.1519747
   mean=124.5527, MSE=40669.28 

diff --git a/save/Frag-Black-icons.eps.xml b/save/Frag-Black-icons.eps.xml
@@ -1,6 +1,6 @@
 <?xml version='1.0' encoding='ISO-8859-1' ?>
 
-<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='Frag-Black-icons.eps' date='2012-01-20 21:07:59' creator='R (2.12.0)' >
+<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='Frag-Black-icons.eps' date='2012-01-20 21:44:11' creator='R (2.12.0)' >
 
 <path type='fill' id='1'>
 	<context>

diff --git a/save/captureFrag-Black-icons.eps b/save/captureFrag-Black-icons.eps
@@ -3,7 +3,7 @@
 (<?xml version='1.0' encoding='ISO-8859-1' ?>
 
 ) print
-(<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='Frag-Black-icons.eps' date='2012-01-20 21:07:59' creator='R (2.12.0)' >
+(<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='Frag-Black-icons.eps' date='2012-01-20 21:44:11' creator='R (2.12.0)' >
 
 ) print
 true setglobal

diff --git a/save/capturehexagon.eps b/save/capturehexagon.eps
@@ -3,7 +3,7 @@
 (<?xml version='1.0' encoding='ISO-8859-1' ?>
 
 ) print
-(<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='hexagon.eps' date='2012-01-20 21:08:01' creator='R (2.12.0)' >
+(<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='hexagon.eps' date='2012-01-20 21:44:12' creator='R (2.12.0)' >
 
 ) print
 true setglobal

diff --git a/save/hexagon.eps.xml b/save/hexagon.eps.xml
@@ -1,6 +1,6 @@
 <?xml version='1.0' encoding='ISO-8859-1' ?>
 
-<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='hexagon.eps' date='2012-01-20 21:08:01' creator='R (2.12.0)' >
+<picture version='3' xmlns:rgml='http://r-project.org/RGML' source='hexagon.eps' date='2012-01-20 21:44:12' creator='R (2.12.0)' >
 
 <path type='fill' id='1'>
 	<context>