PPI input data

[JessQuevza]

Hi Jan!

I downloaded the data from http://cs.tau.ac.il/~jandanielr/db.tar.gz (see Dockerfile).
So my question is, what does each column in the ANAT file (H_sapiens.net) represent?

I would like to upload my own PPI network and I read this is possible (see issue #8) but first I am interested in gaining more experience with your own network.

Many thanks!
Best,
Jessica

[jdrudolph]

You can see all code related to loading the network in phos/data/network.py. The columns correspond to 'source', 'target', 'confidence', 'directed'. For more explanation on the edge confidence measure, see the 'Notes and Remarks' section in the ANAT paper. In PHOTON all edges are assumed to be undirected.