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Is it possible to filter the kraken.report or bracken.report? #74

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B-1991-ing opened this issue May 4, 2023 · 1 comment
Open

Is it possible to filter the kraken.report or bracken.report? #74

B-1991-ing opened this issue May 4, 2023 · 1 comment

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@B-1991-ing
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B-1991-ing commented May 4, 2023 •
edited

Hi Jennifer,

So, is it possible for you to write a script to filter the taxonomy ids I need to generate a new kraken or bracken.report?

I only want the taxonomic ids from Bacteria and Archaea.
kraken.report
Screenshot 2023-05-04 at 10 32 41

braken.report
Screenshot 2023-05-04 at 10 34 47

Thank you very much.

Best,

Bing
@B-1991-ing B-1991-ing changed the title Is it possible to filter the bracken.report? Is it possible to filter the kraken.report or bracken.report? May 4, 2023
@Sabrin2020
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Any progress here please how to filter to include only bacteria ?

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@B-1991-ing @Sabrin2020