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- merged with 13Aug20 feature/gfsv16b branch, 9b923ac
Squashed commit of the following: commit 9b923ac Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Aug 13 18:37:51 2020 +0000 Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal commit d175130 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jul 23 11:20:15 2020 +0000 Issue #1: refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env commit 145f810 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jul 20 21:09:40 2020 +0000 Issue #1: add enkf member sfcf006.nc to enkf tarballs commit d7425d0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:50:54 2020 +0000 Revert "modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos" This reverts commit 4977271. commit 4977271 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 14 19:45:32 2020 +0000 modified: config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos commit 8b0f57f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 13 23:43:55 2020 +0000 modified: ../Externals.cfg and checkout.sh to check out UPP tag tag upp_gfsv16_release.v1.0.10 and model tag GFS.v16.0.10 Updated the algorithm used to compute CAPE and CIN in UPP. The computation is now bounded from the surface up to 1 hPa instead of the model top to avoid producing erroneous large CAPE and CIN values. commit 37e0f57 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Jul 13 17:26:52 2020 +0000 Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh commit d57fc02 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 22:59:35 2020 +0000 modified: checkout.sh to checkout model tag GFS.v16.0.9 1. WW3 update: write all restart files in a sub-directory restart_wave 2. Port production/GFS.v16 to Orion (NOAA-EMC#129) * Update FV3 submodule * Update NEMS submodule * Add 'ulimit -s unlimited' to Orion job card template * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS' * Update modulefiles/orion.intel/fv3 * Update regression test configuration on Orion (for gfs_v16) * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance) * Update NEMS submodule (point to NOAA-EMC/NEMS) commit ae7dbdb Merge: 6e73de0 58fb795 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Jul 8 11:30:07 2020 -0400 Merge pull request NOAA-EMC#96 from NOAA-EMC/feature/gfsv16b_restart modified: exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability commit 58fb795 Merge: 4a1cf2b 6e73de0 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jul 7 15:58:25 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 6e73de0 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 15:03:09 2020 +0000 Issue #1: set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA" commit 22ad770 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jul 7 13:47:26 2020 +0000 Issue #1: update sorc/checkout.sh to checkout verif_global_v1.9.0 commit 4a1cf2b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Jul 6 23:59:03 2020 +0000 further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle as well commit 5fe1a21 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Jul 4 19:43:29 2020 +0000 modified: jobs/JGLOBAL_FORECAST parm/config/config.wave scripts/exglobal_fcst_nemsfv3gfs.sh add WW3 break-point restart capability and clean up forecast script. commit 28b1faf Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:31:18 2020 +0000 modified: config.vrfy to add elif [ $machine = "HERA" ] ; then export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera" commit 61f4a52 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 26 02:21:33 2020 +0000 corrected a typo in hpssarch_gen.sh - echo "${dirname}${head}atma000.ensres${SUFFIX} " >>gdas.txt + echo "${dirname}${head}atma009.ensres${SUFFIX} " >>gdas.txt commit b10a930 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 25 20:25:30 2020 +0000 modified: config.vrfy to point a different syndat directory on Hera export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com" export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat} commit b8192e5 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 25 18:20:01 2020 +0000 Issue #1: HPSS archive and MOS script changes * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs * add ensemble resolution analysis to HPSS gdas tarball * allow variable range to be externally set in run_gfsmos_master scripts commit e599c36 Merge: 99277ae 1e56edd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jun 24 14:16:22 2020 -0400 Merge pull request NOAA-EMC#93 from JessicaMeixner-NOAA/bugfix/exiterr fix for exiting properly with error for wave prep/init scripts commit 1e56edd Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> Date: Wed Jun 24 12:36:53 2020 -0500 fix for exiting properly with error for wave prep/init scripts commit 99277ae Merge: 14dd3c9 4f8d5a5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 16:05:16 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 4f8d5a5 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:57:26 2020 -0400 Update README.md Remove use/mention of manage_externals until checkout.sh is retired. commit 14dd3c9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 23 15:53:11 2020 +0000 modified: Externals.cfg and sorc/checkout.sh to check out model tag GFS.v16.0.7 and UPP tag upp_gfsv16_release.v1.0.9. Changes include: 1) Inline POST Issues NOAA-EMC#136 and $142 * Update ceiling height calculation for global FV3. * add low,middle,high instantaneous cloud fraction * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height. * fix a bug in initializing DBZI * output mixed layer CAPE/CIN * remove simulated GOES-12 brightness temperature. * change the names of time averaged low/mid/high cloud fractions in grib2 files from "TCDC" to "LCDC/MCDC/HCDC", respectively. 2) Model Issue NOAA-EMC#152 * update in-line post control files * upgrade post library to 8.0.9 for hera and wcoss_dell_p3 commit dd76002 Merge: df89cc8 dd599ea Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Jun 23 11:34:40 2020 -0400 Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals Update version of upp in Externals.cfg to be consistent with sorc/che… commit dd599ea Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov> Date: Tue Jun 23 15:25:08 2020 +0000 Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh commit df89cc8 Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Fri Jun 19 18:40:26 2020 -0400 Update config.resources Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform. commit ff8cd28 Merge: 1dd83b8 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:07:59 2020 +0000 Issue #1: merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b commit 965ff42 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Thu Jun 18 20:02:23 2020 +0000 Issue NOAA-EMC#85: update DA checkout to point at release/gfsda.v16.0.0 commit 71d7141 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue Jun 16 20:11:33 2020 +0000 Issue NOAA-EMC#85: (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env commit 1dd83b8 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 16:07:45 2020 +0000 modified: run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel commit eb0e3b4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 14:43:29 2020 +0000 update checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8. 1.0.9 still has issues. commit dfc76f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Jun 16 13:32:01 2020 +0000 Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag commit 7078bb5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Jun 16 13:22:43 2020 +0000 modified: scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified: sorc/checkout.sh updated to model tag GFS.v16.0.6 to fix contrib issue on HERA commit 15d5bed Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 15 20:47:47 2020 +0000 Issue NOAA-EMC#85: add cfp option to chgresfcst; enable threads with chgresfcst commit d878269 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jun 15 16:00:35 2020 +0000 Issue #1 - update Externals.cfg to match updates to checkout.sh commit a2bd621 Merge: 22b735d 295cd05 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Jun 15 11:57:14 2020 -0400 Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost Adapting wavepostsbs for running on Hera commit 295cd05 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Mon Jun 15 11:53:13 2020 -0400 Update exwave_post_sbs.sh Removing obsolete nm variable entries commit 22b735d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Jun 12 20:06:49 2020 +0000 modified: checkout.sh to check out upp_gfsv16_relaese.v1.0.9 output cloud ceiling height and instant total cloud fraction. output instant cloud fraction at low/mid/high cloud layer. correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC". output radar reflectivity at 1/4 km above ground and model layer 1/2. output mixed layer CAPE/CIN. Remove simulated GOES-12 brightness temperature from gfs product. Add the bug fix of initializing DBZI from Ruiyu. commit 10ce1d4 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Jun 11 18:42:22 2020 +0000 Issue #1 - Hotfix to update anaconda module contrib path on Hera commit 58d1139 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu Jun 11 02:44:41 2020 +0000 Adapting wavepostsbs for running on Hera commit c330e60 Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 21:17:00 2020 +0000 add checkout.sh to test on Dell commit 201609b Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 20:51:51 2020 +0000 Commit changes from debugging addition of chgresfcst on hera commit 4405a2c Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 10 14:36:03 2020 +0000 Issue #1: update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base commit fc3066c Author: CoryMartin-NOAA <cory.r.martin@noaa.gov> Date: Wed Jun 10 14:19:07 2020 +0000 First draft to add chgresfcst to rocoto workflow commit 9f2e4ec Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:34:07 2020 +0000 Issue #1: correct typo in scripts/exwave_prep.sh commit 5a8b8f2 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Jun 8 00:15:31 2020 +0000 Issue #1: check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS commit a7306aa Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Jun 7 23:22:53 2020 +0000 modified: jobs/rocoto/post.sh wait for 5 minutes if forecast history file does not exist before exit modified: modulefiles/module_base.hera use GV's temporal build of netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA modified: parm/config/config.base.emc.dyn add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave modified: parm/config/config.fcst -- fix a bug related to setting npe_wav for gfsfcst. if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi -- set io_layout="4,4" for writing gfs restart files modified: parm/config/config.wave set WAVE restart frequency based on restart_interval_gfs (by H. Alves). commit 1082885 Merge: 968b986 bf5a5c4 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 20:26:47 2020 -0400 Merge pull request NOAA-EMC#83 from NOAA-EMC/feature/gfsv16b_restart revive GFS forecast break-point restart capability with IAU turned on commit bf5a5c4 Merge: b27a01d 968b986 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 23:36:52 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart commit 968b986 Merge: 9b36cfd dc512dd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:20:53 2020 +0000 Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b commit 9b36cfd Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:12:56 2020 +0000 Unify output path in gfs_bfr2gpk.sh commit 7675368 Author: Guang Ping Lou <guang.ping.lou@noaa.gov> Date: Thu Jun 4 19:11:23 2020 +0000 remove station elevation adjustment to T,Q and evaporation bug fix commit dc512dd Merge: a7b25a3 987c32a Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Thu Jun 4 12:55:33 2020 -0400 Merge pull request NOAA-EMC#82 from NOAA-EMC/feature/gfsv16b_wavehera Adjustment to wave workflow for running wave component on Hera commit 987c32a Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Thu Jun 4 12:08:05 2020 -0400 Updating checkout to ufs-weather-model GFS.v16.0.5 commit a7b25a3 Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jun 4 14:59:22 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0 commit 0acee67 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Wed Jun 3 20:10:09 2020 +0000 Issue #1: remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github commit b27a01d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 16:58:29 2020 +0000 modified: parm/config/config.fcst modified: scripts/exglobal_fcst_nemsfv3gfs.sh GFS forecast restrat capability from a breakpoint is no longer working with IAU turned on. This function has been overhauled to make it more general and works for cases with and without IAU commit ba89548 Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Date: Wed Jun 3 09:59:35 2020 -0400 Update JWAVE_PREP Removing lines using for testing presence of files while debugging. commit bb79d7a Author: wx20ha <henrique.alves@noaa.gov> Date: Wed Jun 3 02:45:33 2020 +0000 Fixing a few minor bugs in wave_tar.sh after testing on WCOSS commit 8dc2e25 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Jun 3 01:41:18 2020 +0000 add new file: run_gfsmos_master.sh.hera commit 3393cac Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Thu May 28 00:01:51 2020 +0000 Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep. commit 32c5f29 Merge: 49abb90 e87b5a1 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:40:34 2020 +0000 Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera commit 49abb90 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Wed May 27 17:36:12 2020 +0000 Adding comment indicating how to regenerate cdo interpolation weights. commit e87b5a1 Author: wx20ha <henrique.alves@noaa.gov> Date: Wed May 27 02:01:57 2020 +0000 JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera. commit 70d7131 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:39:33 2020 +0000 Issue #1: remove "_break" from commented out lines in config.anal and config.prep. "_break" will cause failue if line active commit 914cb8d Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 20:37:27 2020 +0000 Issue #1: correct typo in parm/config/config.anal commit 2e12e63 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 19:18:57 2020 +0000 Issue #1: update config.anal logic to point ABIBF at the correct GDA directory commit 38cd821 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Tue May 26 18:04:59 2020 +0000 Issue #1: update config files * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612) * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post) * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error commit 0dff61f Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 25 03:08:27 2020 +0000 modified: config.fv3 to reduce tasks assigned to the WAVE component. 70 tasks at C768 is adequate for wave. commit 20ef779 Author: henrique.alves <Henrique.Alves@noaa.gov> Date: Fri May 22 19:52:55 2020 +0000 Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera commit e248236 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri May 22 15:23:59 2020 +0000 modified: config.fcst to set if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then ... lheatstrg=".false." commit 96460e6 Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Fri May 22 13:02:06 2020 +0000 Issue #1: replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files commit 7222f84 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu May 21 14:09:36 2020 +0000 modified: checkout.sh to check out modle tag GFS.v16.0.4. changes include: 1. Remove constraints on mixing length and background diffusitivity over inversion layers on land 2. Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce cold bias in the lower tropospehre 3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in the upper atmospehre. commit 4fa08a7 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed May 20 01:20:21 2020 +0000 modified: HERA.env to add export CFP_MP="YES" # For analdiag with SLURM commit 9f7df9d Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon May 18 15:06:19 2020 +0000 modified: checkout.sh to check out upp_gfsv16_release.v1.0.8 1) Add configuration for Orion. 2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset. 3) Remove SPFH at isobaric levels from pgrb2b dataset. commit 5e4a133 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri May 15 13:08:25 2020 +0000 modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2
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