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Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

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RussTreadon-NOAA opened this issue Jun 15, 2020 · 1 comment
Closed

Refactor GFS v16 workflow to reduce gdasanalcalc run time #85

RussTreadon-NOAA opened this issue Jun 15, 2020 · 1 comment

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@RussTreadon-NOAA
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GFS v16 workflow ecen jobs require chgres'd gdas atmospheric forecasts from the previous cycle. This chgres operation is currently performed in current cycle gdasanalcalc. The chgres executable takes about 8 minutes to run on WCOSS_D. This chgres operation could be performed in the previous cycle, thereby allowing ecen to start 8 minutes earlier in the current cycle.

Cory made the necessary changes in global-workflow branch feature/chgresfcst. These changes require changes in GFS v16 DA. Cory made the DA changes in feature/gdaschgres, a branch in his fork of the NOAA-EMC/GSI repo.

This issue is opened to document these changes, their testing, and merger into global-workflow branch feature/gfsv16b.
RussTreadon-NOAA added a commit that referenced this issue Jun 15, 2020
@RussTreadon-NOAA
Issue #85: add cfp option to chgresfcst; enable threads with chgresfcst
15d5bed
RussTreadon-NOAA added a commit that referenced this issue Jun 16, 2020
@RussTreadon-NOAA
Issue #85: (1) rename "chgresfcst" as "echgres", (2) add chgres varia…
71d7141 
…bles to env
RussTreadon-NOAA added a commit that referenced this issue Jun 18, 2020
@RussTreadon-NOAA
Issue #85: update DA checkout to point at release/gfsda.v16.0.0
965ff42
@RussTreadon-NOAA
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Work complete. feature/chgresfcst merged into feature/gfsv16b at ff8cd28.

This issue is closed.

KateFriedman-NOAA added a commit that referenced this issue Jun 22, 2020
@KateFriedman-NOAA
Issue #5 - Sync merge branch 'feature/gfsv16b' into port2orion
df8dc52 
* feature/gfsv16b:
  Update config.resources
  Issue #85:  update DA checkout to point at release/gfsda.v16.0.0
  Issue #85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env
  Issue #85:  add cfp option to chgresfcst; enable threads with chgresfcst
  add checkout.sh to test on Dell
  Commit changes from debugging addition of chgresfcst on hera
  First draft to add chgresfcst to rocoto workflow
jkhender added a commit that referenced this issue Jun 26, 2020
@jkhender
Merged with 26Jun feature/gfsv16b branch
99b8105 
Corrected setting of nwat for Thompson MP in config.fcst

Squashed commit of the following:

commit 28b1faf
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:31:18 2020 +0000

    modified:   config.vrfy to add
        elif [ $machine = "HERA" ] ; then
            export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

commit 61f4a52
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:21:33 2020 +0000

    corrected a typo in  hpssarch_gen.sh
    -     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
    +     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

commit b10a930
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 25 20:25:30 2020 +0000

    modified:   config.vrfy to point a different syndat directory on Hera
           export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
           export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

commit b8192e5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 25 18:20:01 2020 +0000

    Issue #1:  HPSS archive and MOS script changes

     * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

     * add ensemble resolution analysis to HPSS gdas tarball

     * allow variable range to be externally set in run_gfsmos_master scripts

commit e599c36
Merge: 99277ae 1e56edd
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Jun 24 14:16:22 2020 -0400

    Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr

    fix for exiting properly with error for wave prep/init scripts

commit 1e56edd
Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Date:   Wed Jun 24 12:36:53 2020 -0500

    fix for exiting properly with error for wave prep/init scripts

commit 99277ae
Merge: 14dd3c9 4f8d5a5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c9
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues #136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue #152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002
Merge: df89cc8 dd599ea
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599ea
Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df89cc8
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28
Merge: 1dd83b8 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue #85:  update DA checkout to point at release/gfsda.v16.0.0

commit 71d7141
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue #85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b8
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue #85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d878269
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621
Merge: 22b735d 295cd05
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 22b735d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 12 20:06:49 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

    output cloud ceiling height and instant total cloud fraction.
    output instant cloud fraction at low/mid/high cloud layer.
    correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
    output radar reflectivity at 1/4 km above ground and model layer 1/2.
    output mixed layer CAPE/CIN.
    Remove simulated GOES-12 brightness temperature from gfs product.
    Add the bug fix of initializing DBZI from Ruiyu.

commit 10ce1d4
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Thu Jun 11 18:42:22 2020 +0000

    Issue #1 - Hotfix to update anaconda module contrib path on Hera

commit 58d1139
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit 4405a2c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 10 14:36:03 2020 +0000

    Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

commit fc3066c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow

commit 9f2e4ec
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:34:07 2020 +0000

    Issue #1:  correct typo in scripts/exwave_prep.sh

commit 5a8b8f2
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:15:31 2020 +0000

    Issue #1:  check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS

commit a7306aa
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Sun Jun 7 23:22:53 2020 +0000

    modified:   jobs/rocoto/post.sh
       wait for 5 minutes if forecast history file does not exist before exit

    modified:   modulefiles/module_base.hera
       use GV's temporal build of  netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA

    modified:   parm/config/config.base.emc.dyn
       add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave

    modified:   parm/config/config.fcst
       -- fix a bug related to setting npe_wav for gfsfcst.
           if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi
       -- set  io_layout="4,4" for writing gfs restart files

    modified:   parm/config/config.wave
       set WAVE restart frequency based on restart_interval_gfs (by H. Alves).

commit 1082885
Merge: 968b986 bf5a5c4
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 20:26:47 2020 -0400

    Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart

    revive GFS forecast break-point restart capability with IAU turned on

commit bf5a5c4
Merge: b27a01d 968b986
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 23:36:52 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 968b986
Merge: 9b36cfd dc512dd
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:20:53 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 9b36cfd
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:12:56 2020 +0000

    Unify output path in gfs_bfr2gpk.sh

commit 7675368
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:11:23 2020 +0000

    remove station elevation adjustment to T,Q and evaporation bug fix

commit dc512dd
Merge: a7b25a3 987c32a
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 12:55:33 2020 -0400

    Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera

    Adjustment to wave workflow for running wave component on Hera

commit 987c32a
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Thu Jun 4 12:08:05 2020 -0400

    Updating checkout to ufs-weather-model GFS.v16.0.5

commit a7b25a3
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Thu Jun 4 14:59:22 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0

commit 0acee67
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 3 20:10:09 2020 +0000

    Issue #1:  remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github

commit b27a01d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 16:58:29 2020 +0000

    modified:   parm/config/config.fcst
    modified:   scripts/exglobal_fcst_nemsfv3gfs.sh

    GFS forecast restrat capability from a breakpoint is no longer working
    with IAU turned on.  This function has been overhauled to make it more
    general and works for cases with and without IAU

commit ba89548
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Wed Jun 3 09:59:35 2020 -0400

    Update JWAVE_PREP

    Removing lines using for testing presence of files while debugging.

commit bb79d7a
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed Jun 3 02:45:33 2020 +0000

    Fixing a few minor bugs in wave_tar.sh after testing on WCOSS

commit 8dc2e25
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 01:41:18 2020 +0000

    add new file:   run_gfsmos_master.sh.hera

commit 3393cac
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu May 28 00:01:51 2020 +0000

    Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep.

commit 32c5f29
Merge: 49abb90 e87b5a1
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:40:34 2020 +0000

    Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera

commit 49abb90
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:36:12 2020 +0000

    Adding comment indicating how to regenerate cdo interpolation weights.

commit e87b5a1
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed May 27 02:01:57 2020 +0000

    JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera.

commit 70d7131
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:39:33 2020 +0000

    Issue #1:  remove "_break" from commented out lines in config.anal and config.prep.  "_break" will cause failue if line active

commit 914cb8d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:37:27 2020 +0000

    Issue #1:  correct typo in parm/config/config.anal

commit 2e12e63
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 19:18:57 2020 +0000

    Issue #1:  update config.anal logic to point ABIBF at the correct GDA directory

commit 38cd821
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 18:04:59 2020 +0000

    Issue #1:  update config files

     * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612)

     * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post)

     * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error

commit 0dff61f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 25 03:08:27 2020 +0000

    modified:   config.fv3 to reduce tasks assigned to the WAVE component.  70 tasks at C768 is adequate for wave.

commit 20ef779
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Fri May 22 19:52:55 2020 +0000

    Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera

commit e248236
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri May 22 15:23:59 2020 +0000

    modified:   config.fcst to set
    if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then
    ...

    lheatstrg=".false."

commit 96460e6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 22 13:02:06 2020 +0000

    Issue #1:  replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files

commit 7222f84
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu May 21 14:09:36 2020 +0000

    modified:   checkout.sh to check out modle tag GFS.v16.0.4. changes include:
           1.  Remove constraints on mixing length and background diffusitivity over inversion layers on land
           2.  Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce
               cold bias in the lower tropospehre
           3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in
              the upper atmospehre.

commit 4fa08a7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed May 20 01:20:21 2020 +0000

    modified:   HERA.env to add
        export CFP_MP="YES" # For analdiag with SLURM

commit 9f7df9d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 18 15:06:19 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_release.v1.0.8
       1) Add configuration for Orion.
       2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset.
       3) Remove SPFH at isobaric levels from pgrb2b dataset.

commit 5e4a133
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri May 15 13:08:25 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2

commit 4291349
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue May 12 03:05:17 2020 +0000

    modified:   checkout.sh to check out gldas_gfsv16_release.v1.2.0.

commit 0c0614c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 8 18:29:07 2020 +0000

    Issue #1: change number of tasks for analdiag and ediag to 112 and 56, respectively in config.resources

commit a601acd
Author: emc.glopara <emc.glopara@noaa.gov>
Date:   Fri May 8 04:17:27 2020 +0000

     updated  config.vrfy to point to the fit2obs version that supports reading netcdf history files
        export fitdir="$BASE_GIT/verif/global/Fit2Obs/ncf-vqc/batrun"
        export PREPQFITSH="$fitdir/subfits_hera_slurm"

commit ad86a55
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Wed May 6 15:28:49 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.1

commit 20572b5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 1 19:08:23 2020 +0000

    Issue #1:  update files written to enkf HPSS tarballs to be consistent with GFS v16 DA updates

commit 20baab7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Apr 29 18:49:05 2020 +0000

    modified:   checkout.sh to check out model tag GFS.v16.0.3
                In Sfc_diff.f, a bug was introduced when the surface layer scheme was
                updated last time to reduce 2-m temperature cold biases.   The bug only
                has impact over sea-ice points, where momentum and thermal roughness
                are nevertheless very small.

commit af63464
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Apr 28 18:18:44 2020 +0000

    modified:   qctropcy.f by Qingfu Liu
                A bug was found that the history files (syndat_stmcat , syndat_stmcat.scr)
                save the first and last storm ID used. If the FORTRAN code finds that the
                storm ID has been used in the current hurricane season, the code will
                change the storm ID by adding 1 to the original storm ID. The fix is to
                skip the change of the storm ID.
                See also #63
jkhender added a commit to jkhender/global-workflow that referenced this issue Jul 1, 2020
@jkhender
- merge 23Jun20 port2orion branch, ed6b279, into gsd-ccpp-jet
ea1aa3b 
- updated INFO file

Squashed commit of the following:

commit be717ce
Merge: df8dc52 99277ae
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Tue Jun 23 16:20:51 2020 +0000

    Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion

    * feature/gfsv16b:
      Update README.md
      modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7    and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:
      Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit 99277ae
Merge: 14dd3c9 4f8d5a5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c9
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues NOAA-EMC#136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue NOAA-EMC#152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002
Merge: df89cc8 dd599ea
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599ea
Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df8dc52
Merge: ff46607 df89cc8
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jun 22 14:41:17 2020 +0000

    Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion

    * feature/gfsv16b:
      Update config.resources
      Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0
      Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env
      Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst
      add checkout.sh to test on Dell
      Commit changes from debugging addition of chgresfcst on hera
      First draft to add chgresfcst to rocoto workflow

commit df89cc8
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28
Merge: 1dd83b8 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

commit ff46607
Merge: ed6b279 1dd83b8
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Wed Jun 17 17:23:44 2020 +0000

    Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion

    * feature/gfsv16b:
      modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel
      update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.
      Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag
      modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short. modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA
      Issue #1 - update Externals.cfg to match updates to checkout.sh
      Update exwave_post_sbs.sh
      Adapting wavepostsbs for running on Hera

commit 71d7141
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b8
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d878269
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621
Merge: 22b735d 295cd05
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 58d1139
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit fc3066c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow
danielabdi-noaa pushed a commit to NOAA-GSL/global-workflow that referenced this issue Jul 9, 2020
@christopherwharrop-noaa @CoryMartin-NOAA
@RussTreadon-NOAA @ajhenrique @KateFriedman-NOAA @yangfanglin @JessicaMeixner-NOAA
Merge updates from EMC. (#8)
cd757bc 
* First draft to add chgresfcst to rocoto workflow

* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Commit changes from debugging addition of chgresfcst on hera

* add checkout.sh to test on Dell

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

* Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

* modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

* Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

* update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

* modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

* Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

* Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

* Update config.resources

Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

* Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

* modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
   and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

1) Inline POST Issues NOAA-EMC#136 and $142
   * Update ceiling height calculation for global FV3.
   * add low,middle,high instantaneous cloud fraction
   * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
   * fix a bug in initializing DBZI
   * output mixed layer CAPE/CIN
   * remove simulated GOES-12 brightness temperature.
   * change the names of time averaged low/mid/high cloud fractions in grib2 files
     from "TCDC" to "LCDC/MCDC/HCDC", respectively.

2) Model Issue NOAA-EMC#152
   * update in-line post control files
   * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

* Merge updates from EMC.

* Update README.md

Remove use/mention of manage_externals until checkout.sh is retired.

* fix for exiting properly with error for wave prep/init scripts

* Issue #1:  HPSS archive and MOS script changes

 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts

* modified:   config.vrfy to point a different syndat directory on Hera
       export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
       export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

* corrected a typo in  hpssarch_gen.sh
-     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
+     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

* modified:   config.vrfy to add
    elif [ $machine = "HERA" ] ; then
        export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

* modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
    add WW3 break-point restart capability and clean up forecast script.

* further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

* Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

* Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

* modified:   checkout.sh to checkout model tag GFS.v16.0.9

 1.   WW3 update: write all restart files in a sub-directory restart_wave
 2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
    * Update FV3 submodule
    * Update NEMS submodule
    * Add 'ulimit -s unlimited' to Orion job card template
    * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
    * Update modulefiles/orion.intel/fv3
    * Update regression test configuration on Orion (for gfs_v16)
    * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
    * Update NEMS submodule (point to NOAA-EMC/NEMS)

Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
danielabdi-noaa pushed a commit to NOAA-GSL/global-workflow that referenced this issue Aug 20, 2020
@christopherwharrop-noaa @CoryMartin-NOAA
@RussTreadon-NOAA @ajhenrique @KateFriedman-NOAA @yangfanglin @JessicaMeixner-NOAA @BoiVuong-NOAA
Feature/emc updates (#10)
2ab2d9e 
* First draft to add chgresfcst to rocoto workflow

* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Commit changes from debugging addition of chgresfcst on hera

* add checkout.sh to test on Dell

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

* Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

* modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

* Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

* update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

* modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

* Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

* Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

* Update config.resources

Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

* Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

* modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
   and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

1) Inline POST Issues NOAA-EMC#136 and $142
   * Update ceiling height calculation for global FV3.
   * add low,middle,high instantaneous cloud fraction
   * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
   * fix a bug in initializing DBZI
   * output mixed layer CAPE/CIN
   * remove simulated GOES-12 brightness temperature.
   * change the names of time averaged low/mid/high cloud fractions in grib2 files
     from "TCDC" to "LCDC/MCDC/HCDC", respectively.

2) Model Issue NOAA-EMC#152
   * update in-line post control files
   * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

* Update README.md

Remove use/mention of manage_externals until checkout.sh is retired.

* fix for exiting properly with error for wave prep/init scripts

* Issue #1:  HPSS archive and MOS script changes

 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts

* modified:   config.vrfy to point a different syndat directory on Hera
       export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
       export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

* corrected a typo in  hpssarch_gen.sh
-     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
+     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

* modified:   config.vrfy to add
    elif [ $machine = "HERA" ] ; then
        export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

* Issue NOAA-EMC#94 - generalization updates to link script

- change 'nco' mode to 'prod' mode
- change 'emc' mode to 'dev' mode
- update machine values to match target names

* Issue NOAA-EMC#94 - commit initial version of new installation script

* modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
    add WW3 break-point restart capability and clean up forecast script.

* further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

* Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

* Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

* Issue NOAA-EMC#94 - initial add of COMPONENTatmos variable to scripts

* modified:   checkout.sh to checkout model tag GFS.v16.0.9

 1.   WW3 update: write all restart files in a sub-directory restart_wave
 2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
    * Update FV3 submodule
    * Update NEMS submodule
    * Add 'ulimit -s unlimited' to Orion job card template
    * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
    * Update modulefiles/orion.intel/fv3
    * Update regression test configuration on Orion (for gfs_v16)
    * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
    * Update NEMS submodule (point to NOAA-EMC/NEMS)

* Issue NOAA-EMC#94 - convert  variables into hard-coded values per feedback

* Issue NOAA-EMC#94 - fix dependencies with  in the path

* Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh

* modified:   ../Externals.cfg  and   checkout.sh to check out
            UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
            Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
            is now bounded from the surface up to 1 hPa instead of the model top to
            avoid producing erroneous large CAPE and CIN values.

* modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos

* Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"

This reverts commit 4977271.

* GitHub Issue#94 update gempak's ush scripts

* Issue NOAA-EMC#94 - added  and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention

* Issue NOAA-EMC#94 - updates to wave scripts based on NCO feedback

* Issue NOAA-EMC#94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead

* Issue NOAA-EMC#94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting

* Issue NOAA-EMC#94 - fix dirpath in ush/hpssarch_gen.sh

* Issue NOAA-EMC#94 - component checkout updates to use forks and new UPP tag

* Issue #1:  add enkf member sfcf006.nc to enkf tarballs

* Issue NOAA-EMC#94 - new GLDAS tag with atmos directory

* Issue #1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env

* Reverting link_fv3gfs.sh, will commit in different changeset

* Issue NOAA-EMC#94 - updating GLDAS and EMC_post tags in Externals.cfg

* Issue NOAA-EMC#94 - add  to gempak scripts and cleanup based on PR feedback

* Issue NOAA-EMC#94 - removing new install script, will introduce via another branch, needs more testing

* Issue NOAA-EMC#94 - retire BASE_SVN

* Issue NOAA-EMC#94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos

* Issue NOAA-EMC#94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available

* Issue NOAA-EMC#94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team

* Issue NOAA-EMC#94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh

* Issue NOAA-EMC#94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post

* Issue NOAA-EMC#94 - updates for FSU tracker

* Issue NOAA-EMC#94 - fix AWIPS file dependency

* Issue NOAA-EMC#94 - update WCOSS-Dell module versions to prod_util and EnvVars

* Issue NOAA-EMC#94 - update CFP module version on WCOSS-Dell

* Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

* Issue NOAA-EMC#94 - pull in two fixes for wave job setup in free-forecast mode

* Issue NOAA-EMC#94 - fix to messed up shebang in setup_expt_fcstonly.py

Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
danielabdi-noaa pushed a commit to NOAA-GSL/global-workflow that referenced this issue Aug 20, 2020
@christopherwharrop-noaa @CoryMartin-NOAA
@RussTreadon-NOAA @ajhenrique @KateFriedman-NOAA @yangfanglin @JessicaMeixner-NOAA @BoiVuong-NOAA
Feature/gfsv16b (#11)
30483eb 
* First draft to add chgresfcst to rocoto workflow

* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Commit changes from debugging addition of chgresfcst on hera

* add checkout.sh to test on Dell

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

* Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

* modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

* Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

* update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

* modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

* Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

* Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

* Update config.resources

Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

* Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

* modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
   and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

1) Inline POST Issues NOAA-EMC#136 and $142
   * Update ceiling height calculation for global FV3.
   * add low,middle,high instantaneous cloud fraction
   * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
   * fix a bug in initializing DBZI
   * output mixed layer CAPE/CIN
   * remove simulated GOES-12 brightness temperature.
   * change the names of time averaged low/mid/high cloud fractions in grib2 files
     from "TCDC" to "LCDC/MCDC/HCDC", respectively.

2) Model Issue NOAA-EMC#152
   * update in-line post control files
   * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

* Update README.md

Remove use/mention of manage_externals until checkout.sh is retired.

* fix for exiting properly with error for wave prep/init scripts

* Issue #1:  HPSS archive and MOS script changes

 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts

* modified:   config.vrfy to point a different syndat directory on Hera
       export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
       export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

* corrected a typo in  hpssarch_gen.sh
-     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
+     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

* modified:   config.vrfy to add
    elif [ $machine = "HERA" ] ; then
        export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

* Issue NOAA-EMC#94 - generalization updates to link script

- change 'nco' mode to 'prod' mode
- change 'emc' mode to 'dev' mode
- update machine values to match target names

* Issue NOAA-EMC#94 - commit initial version of new installation script

* modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
    add WW3 break-point restart capability and clean up forecast script.

* further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

* Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

* Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

* Issue NOAA-EMC#94 - initial add of COMPONENTatmos variable to scripts

* modified:   checkout.sh to checkout model tag GFS.v16.0.9

 1.   WW3 update: write all restart files in a sub-directory restart_wave
 2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
    * Update FV3 submodule
    * Update NEMS submodule
    * Add 'ulimit -s unlimited' to Orion job card template
    * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
    * Update modulefiles/orion.intel/fv3
    * Update regression test configuration on Orion (for gfs_v16)
    * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
    * Update NEMS submodule (point to NOAA-EMC/NEMS)

* Issue NOAA-EMC#94 - convert  variables into hard-coded values per feedback

* Issue NOAA-EMC#94 - fix dependencies with  in the path

* Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh

* modified:   ../Externals.cfg  and   checkout.sh to check out
            UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
            Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
            is now bounded from the surface up to 1 hPa instead of the model top to
            avoid producing erroneous large CAPE and CIN values.

* modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos

* Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"

This reverts commit 4977271.

* GitHub Issue#94 update gempak's ush scripts

* Issue NOAA-EMC#94 - added  and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention

* Issue NOAA-EMC#94 - updates to wave scripts based on NCO feedback

* Issue NOAA-EMC#94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead

* Issue NOAA-EMC#94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting

* Issue NOAA-EMC#94 - fix dirpath in ush/hpssarch_gen.sh

* Issue NOAA-EMC#94 - component checkout updates to use forks and new UPP tag

* Issue #1:  add enkf member sfcf006.nc to enkf tarballs

* Issue NOAA-EMC#94 - new GLDAS tag with atmos directory

* Issue #1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env

* Reverting link_fv3gfs.sh, will commit in different changeset

* Issue NOAA-EMC#94 - updating GLDAS and EMC_post tags in Externals.cfg

* Issue NOAA-EMC#94 - add  to gempak scripts and cleanup based on PR feedback

* Issue NOAA-EMC#94 - removing new install script, will introduce via another branch, needs more testing

* Issue NOAA-EMC#94 - retire BASE_SVN

* Issue NOAA-EMC#94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos

* Issue NOAA-EMC#94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available

* Issue NOAA-EMC#94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team

* Issue NOAA-EMC#94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh

* Issue NOAA-EMC#94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post

* Issue NOAA-EMC#94 - updates for FSU tracker

* Issue NOAA-EMC#94 - fix AWIPS file dependency

* Issue NOAA-EMC#94 - update WCOSS-Dell module versions to prod_util and EnvVars

* Issue NOAA-EMC#94 - update CFP module version on WCOSS-Dell

* Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

* Issue NOAA-EMC#94 - pull in two fixes for wave job setup in free-forecast mode

* Issue NOAA-EMC#94 - fix to messed up shebang in setup_expt_fcstonly.py

Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
christopherwharrop-noaa added a commit to NOAA-GSL/global-workflow that referenced this issue Aug 20, 2020
@christopherwharrop-noaa @CoryMartin-NOAA
@RussTreadon-NOAA @ajhenrique @KateFriedman-NOAA @yangfanglin @JessicaMeixner-NOAA @BoiVuong-NOAA
Feature/gfsv16b (#12)
764d321 
* First draft to add chgresfcst to rocoto workflow

* Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

* Commit changes from debugging addition of chgresfcst on hera

* add checkout.sh to test on Dell

* Adapting wavepostsbs for running on Hera

* Issue #1 - Hotfix to update anaconda module contrib path on Hera

* modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

* Update exwave_post_sbs.sh

Removing obsolete nm variable entries

* Issue #1 - update Externals.cfg to match updates to checkout.sh

* Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

* modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

* Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

* update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

* modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

* Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

* Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

* Update config.resources

Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

* Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

* modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
   and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

1) Inline POST Issues NOAA-EMC#136 and $142
   * Update ceiling height calculation for global FV3.
   * add low,middle,high instantaneous cloud fraction
   * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
   * fix a bug in initializing DBZI
   * output mixed layer CAPE/CIN
   * remove simulated GOES-12 brightness temperature.
   * change the names of time averaged low/mid/high cloud fractions in grib2 files
     from "TCDC" to "LCDC/MCDC/HCDC", respectively.

2) Model Issue NOAA-EMC#152
   * update in-line post control files
   * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

* Update README.md

Remove use/mention of manage_externals until checkout.sh is retired.

* fix for exiting properly with error for wave prep/init scripts

* Issue #1:  HPSS archive and MOS script changes

 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts

* modified:   config.vrfy to point a different syndat directory on Hera
       export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
       export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

* corrected a typo in  hpssarch_gen.sh
-     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
+     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

* modified:   config.vrfy to add
    elif [ $machine = "HERA" ] ; then
        export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

* Issue NOAA-EMC#94 - generalization updates to link script

- change 'nco' mode to 'prod' mode
- change 'emc' mode to 'dev' mode
- update machine values to match target names

* Issue NOAA-EMC#94 - commit initial version of new installation script

* modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
    add WW3 break-point restart capability and clean up forecast script.

* further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

* Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

* Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

* Issue NOAA-EMC#94 - initial add of COMPONENTatmos variable to scripts

* modified:   checkout.sh to checkout model tag GFS.v16.0.9

 1.   WW3 update: write all restart files in a sub-directory restart_wave
 2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
    * Update FV3 submodule
    * Update NEMS submodule
    * Add 'ulimit -s unlimited' to Orion job card template
    * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
    * Update modulefiles/orion.intel/fv3
    * Update regression test configuration on Orion (for gfs_v16)
    * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
    * Update NEMS submodule (point to NOAA-EMC/NEMS)

* Issue NOAA-EMC#94 - convert  variables into hard-coded values per feedback

* Issue NOAA-EMC#94 - fix dependencies with  in the path

* Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh

* modified:   ../Externals.cfg  and   checkout.sh to check out
            UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
            Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
            is now bounded from the surface up to 1 hPa instead of the model top to
            avoid producing erroneous large CAPE and CIN values.

* modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos

* Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"

This reverts commit 4977271.

* GitHub Issue#94 update gempak's ush scripts

* Issue NOAA-EMC#94 - added  and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention

* Issue NOAA-EMC#94 - updates to wave scripts based on NCO feedback

* Issue NOAA-EMC#94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead

* Issue NOAA-EMC#94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting

* Issue NOAA-EMC#94 - fix dirpath in ush/hpssarch_gen.sh

* Issue NOAA-EMC#94 - component checkout updates to use forks and new UPP tag

* Issue #1:  add enkf member sfcf006.nc to enkf tarballs

* Issue NOAA-EMC#94 - new GLDAS tag with atmos directory

* Issue #1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env

* Reverting link_fv3gfs.sh, will commit in different changeset

* Issue NOAA-EMC#94 - updating GLDAS and EMC_post tags in Externals.cfg

* Issue NOAA-EMC#94 - add  to gempak scripts and cleanup based on PR feedback

* Issue NOAA-EMC#94 - removing new install script, will introduce via another branch, needs more testing

* Issue NOAA-EMC#94 - retire BASE_SVN

* Issue NOAA-EMC#94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos

* Issue NOAA-EMC#94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available

* Issue NOAA-EMC#94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team

* Issue NOAA-EMC#94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh

* Issue NOAA-EMC#94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post

* Issue NOAA-EMC#94 - updates for FSU tracker

* Issue NOAA-EMC#94 - fix AWIPS file dependency

* Issue NOAA-EMC#94 - update WCOSS-Dell module versions to prod_util and EnvVars

* Issue NOAA-EMC#94 - update CFP module version on WCOSS-Dell

* Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

* Issue NOAA-EMC#94 - pull in two fixes for wave job setup in free-forecast mode

* Issue NOAA-EMC#94 - fix to messed up shebang in setup_expt_fcstonly.py

Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov>
Co-authored-by: henrique.alves <Henrique.Alves@noaa.gov>
Co-authored-by: Kate.Friedman <Kate.Friedman@noaa.gov>
Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov>
Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Co-authored-by: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Co-authored-by: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
jkhender added a commit to jkhender/global-workflow that referenced this issue Sep 13, 2020
@jkhender
- merged with 13Aug20 feature/gfsv16b branch, 9b923ac
2e42df4 
Squashed commit of the following:

commit 9b923ac
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Aug 13 18:37:51 2020 +0000

    Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

commit d175130
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jul 23 11:20:15 2020 +0000

    Issue #1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env

commit 145f810
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jul 20 21:09:40 2020 +0000

    Issue #1:  add enkf member sfcf006.nc to enkf tarballs

commit d7425d0
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jul 14 19:50:54 2020 +0000

    Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"

    This reverts commit 4977271.

commit 4977271
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jul 14 19:45:32 2020 +0000

    modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos

commit 8b0f57f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Jul 13 23:43:55 2020 +0000

    modified:   ../Externals.cfg  and   checkout.sh to check out
                UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
                Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
                is now bounded from the surface up to 1 hPa instead of the model top to
                avoid producing erroneous large CAPE and CIN values.

commit 37e0f57
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 13 17:26:52 2020 +0000

    Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh

commit d57fc02
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jul 8 22:59:35 2020 +0000

    modified:   checkout.sh to checkout model tag GFS.v16.0.9

     1.   WW3 update: write all restart files in a sub-directory restart_wave
     2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
        * Update FV3 submodule
        * Update NEMS submodule
        * Add 'ulimit -s unlimited' to Orion job card template
        * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
        * Update modulefiles/orion.intel/fv3
        * Update regression test configuration on Orion (for gfs_v16)
        * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
        * Update NEMS submodule (point to NOAA-EMC/NEMS)

commit ae7dbdb
Merge: 6e73de0 58fb795
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Wed Jul 8 11:30:07 2020 -0400

    Merge pull request NOAA-EMC#96 from NOAA-EMC/feature/gfsv16b_restart

    modified:   exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability

commit 58fb795
Merge: 4a1cf2b 6e73de0
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jul 7 15:58:25 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 6e73de0
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jul 7 15:03:09 2020 +0000

    Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

commit 22ad770
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jul 7 13:47:26 2020 +0000

    Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

commit 4a1cf2b
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Jul 6 23:59:03 2020 +0000

    further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

commit 5fe1a21
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Sat Jul 4 19:43:29 2020 +0000

    modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
        add WW3 break-point restart capability and clean up forecast script.

commit 28b1faf
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:31:18 2020 +0000

    modified:   config.vrfy to add
        elif [ $machine = "HERA" ] ; then
            export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

commit 61f4a52
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:21:33 2020 +0000

    corrected a typo in  hpssarch_gen.sh
    -     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
    +     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

commit b10a930
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 25 20:25:30 2020 +0000

    modified:   config.vrfy to point a different syndat directory on Hera
           export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
           export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

commit b8192e5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 25 18:20:01 2020 +0000

    Issue #1:  HPSS archive and MOS script changes

     * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

     * add ensemble resolution analysis to HPSS gdas tarball

     * allow variable range to be externally set in run_gfsmos_master scripts

commit e599c36
Merge: 99277ae 1e56edd
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Jun 24 14:16:22 2020 -0400

    Merge pull request NOAA-EMC#93 from JessicaMeixner-NOAA/bugfix/exiterr

    fix for exiting properly with error for wave prep/init scripts

commit 1e56edd
Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Date:   Wed Jun 24 12:36:53 2020 -0500

    fix for exiting properly with error for wave prep/init scripts

commit 99277ae
Merge: 14dd3c9 4f8d5a5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c9
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues NOAA-EMC#136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue NOAA-EMC#152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002
Merge: df89cc8 dd599ea
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request NOAA-EMC#91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599ea
Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df89cc8
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28
Merge: 1dd83b8 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff42
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue NOAA-EMC#85:  update DA checkout to point at release/gfsda.v16.0.0

commit 71d7141
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue NOAA-EMC#85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b8
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue NOAA-EMC#85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d878269
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621
Merge: 22b735d 295cd05
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request NOAA-EMC#84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 22b735d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 12 20:06:49 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

    output cloud ceiling height and instant total cloud fraction.
    output instant cloud fraction at low/mid/high cloud layer.
    correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
    output radar reflectivity at 1/4 km above ground and model layer 1/2.
    output mixed layer CAPE/CIN.
    Remove simulated GOES-12 brightness temperature from gfs product.
    Add the bug fix of initializing DBZI from Ruiyu.

commit 10ce1d4
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Thu Jun 11 18:42:22 2020 +0000

    Issue #1 - Hotfix to update anaconda module contrib path on Hera

commit 58d1139
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit 4405a2c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 10 14:36:03 2020 +0000

    Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

commit fc3066c
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow

commit 9f2e4ec
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:34:07 2020 +0000

    Issue #1:  correct typo in scripts/exwave_prep.sh

commit 5a8b8f2
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:15:31 2020 +0000

    Issue #1:  check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS

commit a7306aa
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Sun Jun 7 23:22:53 2020 +0000

    modified:   jobs/rocoto/post.sh
       wait for 5 minutes if forecast history file does not exist before exit

    modified:   modulefiles/module_base.hera
       use GV's temporal build of  netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA

    modified:   parm/config/config.base.emc.dyn
       add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave

    modified:   parm/config/config.fcst
       -- fix a bug related to setting npe_wav for gfsfcst.
           if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi
       -- set  io_layout="4,4" for writing gfs restart files

    modified:   parm/config/config.wave
       set WAVE restart frequency based on restart_interval_gfs (by H. Alves).

commit 1082885
Merge: 968b986 bf5a5c4
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 20:26:47 2020 -0400

    Merge pull request NOAA-EMC#83 from NOAA-EMC/feature/gfsv16b_restart

    revive GFS forecast break-point restart capability with IAU turned on

commit bf5a5c4
Merge: b27a01d 968b986
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 23:36:52 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 968b986
Merge: 9b36cfd dc512dd
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:20:53 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 9b36cfd
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:12:56 2020 +0000

    Unify output path in gfs_bfr2gpk.sh

commit 7675368
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:11:23 2020 +0000

    remove station elevation adjustment to T,Q and evaporation bug fix

commit dc512dd
Merge: a7b25a3 987c32a
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 12:55:33 2020 -0400

    Merge pull request NOAA-EMC#82 from NOAA-EMC/feature/gfsv16b_wavehera

    Adjustment to wave workflow for running wave component on Hera

commit 987c32a
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Thu Jun 4 12:08:05 2020 -0400

    Updating checkout to ufs-weather-model GFS.v16.0.5

commit a7b25a3
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Thu Jun 4 14:59:22 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0

commit 0acee67
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 3 20:10:09 2020 +0000

    Issue #1:  remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github

commit b27a01d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 16:58:29 2020 +0000

    modified:   parm/config/config.fcst
    modified:   scripts/exglobal_fcst_nemsfv3gfs.sh

    GFS forecast restrat capability from a breakpoint is no longer working
    with IAU turned on.  This function has been overhauled to make it more
    general and works for cases with and without IAU

commit ba89548
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Wed Jun 3 09:59:35 2020 -0400

    Update JWAVE_PREP

    Removing lines using for testing presence of files while debugging.

commit bb79d7a
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed Jun 3 02:45:33 2020 +0000

    Fixing a few minor bugs in wave_tar.sh after testing on WCOSS

commit 8dc2e25
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 01:41:18 2020 +0000

    add new file:   run_gfsmos_master.sh.hera

commit 3393cac
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu May 28 00:01:51 2020 +0000

    Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep.

commit 32c5f29
Merge: 49abb90 e87b5a1
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:40:34 2020 +0000

    Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera

commit 49abb90
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:36:12 2020 +0000

    Adding comment indicating how to regenerate cdo interpolation weights.

commit e87b5a1
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed May 27 02:01:57 2020 +0000

    JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera.

commit 70d7131
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:39:33 2020 +0000

    Issue #1:  remove "_break" from commented out lines in config.anal and config.prep.  "_break" will cause failue if line active

commit 914cb8d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:37:27 2020 +0000

    Issue #1:  correct typo in parm/config/config.anal

commit 2e12e63
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 19:18:57 2020 +0000

    Issue #1:  update config.anal logic to point ABIBF at the correct GDA directory

commit 38cd821
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 18:04:59 2020 +0000

    Issue #1:  update config files

     * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612)

     * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post)

     * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error

commit 0dff61f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 25 03:08:27 2020 +0000

    modified:   config.fv3 to reduce tasks assigned to the WAVE component.  70 tasks at C768 is adequate for wave.

commit 20ef779
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Fri May 22 19:52:55 2020 +0000

    Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera

commit e248236
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri May 22 15:23:59 2020 +0000

    modified:   config.fcst to set
    if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then
    ...

    lheatstrg=".false."

commit 96460e6
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 22 13:02:06 2020 +0000

    Issue #1:  replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files

commit 7222f84
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu May 21 14:09:36 2020 +0000

    modified:   checkout.sh to check out modle tag GFS.v16.0.4. changes include:
           1.  Remove constraints on mixing length and background diffusitivity over inversion layers on land
           2.  Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce
               cold bias in the lower tropospehre
           3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in
              the upper atmospehre.

commit 4fa08a7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed May 20 01:20:21 2020 +0000

    modified:   HERA.env to add
        export CFP_MP="YES" # For analdiag with SLURM

commit 9f7df9d
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 18 15:06:19 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_release.v1.0.8
       1) Add configuration for Orion.
       2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset.
       3) Remove SPFH at isobaric levels from pgrb2b dataset.

commit 5e4a133
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri May 15 13:08:25 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2
jkhender added a commit to jkhender/global-workflow that referenced this issue Sep 17, 2020
@jkhender
merged with 15Sep20 feature/gfsv16b branch, ce1c782
81af359 
Squashed commit of the following:

commit ce1c78255f4bf8f40c2f116547062c7f1b3832c5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 15 10:25:37 2020 +0000

    Issue #1:  add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix)

commit 67b33dd15633345e0fd59dd37728c26b36d4c0b3
Merge: c33869da 586fe6ce
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Sep 14 10:34:39 2020 -0400

    Merge pull request #130 from JessicaMeixner-NOAA/bugfix/rtofs

    Bugfix for rtofs

commit 586fe6ce19c5fc281dec16be3347d0311f3e99ce
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Mon Sep 14 14:29:01 2020 +0000

    adding the line to go back a day for RTOFS for the if not NCO
    section because RTOFS will not be available until 06 cycle

commit c33869dab2704396ea6e569dcd202a2b9866827a
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Sep 14 02:34:08 2020 +0000

    deleted  relocate_mv_nvortex.fd since storm relocation is no longer needed.
    modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex

commit 4320bf9fd55757df79b63ed15c2041b1acd0e604
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Sat Sep 12 00:05:38 2020 +0000

    Issue #1:  correct DA typos in sorc/link_fv3gfs.sh

commit 674cd841a7be3a2a9c772cd455ab980195ea9fcc
Merge: 46c2404e ad1a9d90
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Fri Sep 11 15:06:36 2020 -0400

    Merge pull request #124 from JessicaMeixner-NOAA/feature/gfsv16b-wave

    Splitting post jobs for waves

commit ad1a9d9044e89b75ec82bb201e35005552d3d177
Merge: 986f8f0b fd687727
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date:   Fri Sep 11 14:01:35 2020 -0400

    Merge pull request #4 from KateFriedman-NOAA/feature/gfsv16b-splitwavepost

    Sync with feature/gfsv16b and small updates to split wave post changes

commit fd687727b2df80f81fabc41b94f808b74e68783c
Merge: 986f8f0b fc60e895
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Sep 11 17:52:30 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-splitwavepost

commit fc60e895dea1c123a4b8e02b50df0d0cfa43f77f
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Sep 11 17:45:03 2020 +0000

    Increase walltime for new wavepost jobs

commit e0dd1097de2c335400a546137569886a838c46ba
Merge: 0844b004 46c2404e
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Sep 11 14:20:15 2020 +0000

    Merge branch 'feature/gfsv16b' into feature/gfsv16b-wave

commit 46c2404eba485d08e381ef81ebd5ac10c5ad605f
Merge: c5546570 9d9b79c9
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Fri Sep 11 10:15:49 2020 -0400

    Merge pull request #128 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit c554657023d82ac934b481593e55406c45157932
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Sep 11 13:59:51 2020 +0000

    Issue #1:  update name of DA jobs and scripts in accordance with WCOSS Implementation Standards

commit 9d9b79c911add71065b0999821772d026609ad62
Merge: cb78f7b8 d3946f90
Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov>
Date:   Fri Sep 11 13:48:19 2020 +0000

    Issue #94 solving a conflict

commit cb78f7b839a7b5fd5082f39592e3b450ce059e82
Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov>
Date:   Fri Sep 11 13:21:41 2020 +0000

    Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script

commit d3946f9006f433e0a6b2f459aeaa7fd8bf800aff
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 8 14:46:39 2020 +0000

    Issue #1:  clean up DA sections of link_fv3gfs.sh

commit 986f8f0b9858f61d32d337a67efa966a7948aa94
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit 0844b0043c937925c5ad76b4fad03308483d49b3
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Fri Sep 4 15:42:25 2020 +0000

    fix from Bhavani for having first wave grib file be set
    as a forecast instead of analysis

commit 64409b1e9e976b75afd8a3548e7023dce534c4ae
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Sep 3 15:42:23 2020 +0000

    Adding missing space to if-block in env files to resolve runtime failure

commit 0485442f5876b82de73c47429d3a70f58f0aa263
Merge: 26c84b3c 2006bbcb
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Sep 3 15:37:50 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b-wave' into feature/gfsv16b-wave

    * upstream/feature/gfsv16b-wave:
      adding pnt jobs as seperate jobs for env
      moving definitions of wavempexec and wave_mpmd from jobs to env
      lowering the resource requirement for wave prep job
      update module for cdo
      updates to resources for wave jobs
      Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py
      cleaning up wave point post scripts
      rename wave post script
      remove gridded so can rename
      updates to boundary point
      Remove extra space from line
      Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes
      fix typos
      updating WCOSS work around for CDO, CDO_ROOT is missing from module file
      adding module use for cdo module on wcoss dell
      updates for new weights file and adding cdo module for wave prep
      Adding new wavepostbndpnt and wavepostpnt jobs
      updating wave post scripts for restructured format
      updates to JJOBs for wave post point for new structure
      changing exit 0 to exit number for FATAL errors in ice prep for waves
      updating error message and exit if there is no current input file
      update WAVE_PREP so that currents do not check for previous 24 hour so that parallels will be reproducible also deleted unused variable
      renaming wave job and scripts
      update jobs for waves
      Issue #94 - pull in two fixes for wave job setup in free-forecast mode
      updates for wave scripts to split them, also added updates from GEFS branch to add extra error checking
      updates from gefs post workflow: updates for re-run case as well as extra error messages

commit 26c84b3ca81dec965ab31d00409b537f61174dc1
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Sep 3 14:06:29 2020 +0000

    Issue #1:  remove pgrb2b.0p25 dependency from gfsawips in setup_workflow.py

commit 609e157c2477b662b55bbf3d53999cdd30856bc8
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Sep 2 20:35:28 2020 +0000

    Issue #1 - update WAFS tag to gfs_wafs.v6.0.4 and remove HOURLY variable from WAFS configs

commit b0bebad6258bd81c0b0c89b559a04d9b059c838e
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Sep 2 20:08:01 2020 +0000

    Issue #1 - change wavegempak and waveawipsgridded dependency to match waveawipsbulls and start when wavepostsbs is complete

commit 084c89e3d562f8c9977eaa17624646be388f7854
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Sep 2 19:58:37 2020 +0000

    Issue #1:  set n_sponge=42 in gfs section of config.fcst

commit 2006bbcb1e54e3cd5ae0ff2826b6d0b211c1d013
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Wed Sep 2 19:22:38 2020 +0000

    adding pnt jobs as seperate jobs for env

commit c61cd59488b64ead77e13b2eb5faeb383d052ea0
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Wed Sep 2 19:02:21 2020 +0000

    moving definitions of wavempexec and wave_mpmd from jobs to env

commit 68ed2d670ebe25713554f2165a0bbc7c35fb5030
Merge: 4e7975d2 70abda26
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Wed Sep 2 17:45:26 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-wave

    Conflicts:
    	parm/config/config.resources
    	ush/rocoto/setup_workflow.py
    	ush/rocoto/setup_workflow_fcstonly.py

commit 70abda260dc9ab47533d25cd570dd055c4644123
Merge: 0a31d568 52e987ac
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Sep 2 10:28:22 2020 -0400

    Merge pull request #122 from KateFriedman-NOAA/feature/gfsv16b_wavedown

    Add downstream wave jobs to GFSv16

commit 0a31d568bdacd0fb2d8bc6e1fddb09d2c72d014c
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Sep 2 14:09:57 2020 +0000

    Remove unneeded settings from config.post

commit 52e987ac67477932e5b034321cf52f1cc756081c
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Sep 2 13:05:42 2020 +0000

    Added null DBNROOT to wave awips configs

commit b3c7b7379a6ebb53b4d4533b894b1bf36df3c2fd
Merge: 074f2782 add6ea0b
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Sep 2 13:02:41 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b_wavedown

commit 4e7975d265857e4e634e0c7352f6ed2de1a99336
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Tue Sep 1 22:45:05 2020 +0000

    lowering the resource requirement for wave prep job

commit add6ea0bae2c56bba2e3d76460771095b98786b1
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Sep 1 19:40:10 2020 +0000

    Issue #1:  rename enkf_chgres_recenter executables in accordance with WCOSS Implementation Standards

commit 8a7e8d9944b8727da91bfb28bbfe44958f0aeb65
Merge: 4c9978a8 595edcfa
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Sep 1 15:00:08 2020 -0400

    Merge pull request #121 from KateFriedman-NOAA/feature/gfsv16b-wafs

    Adding WAFS jobs to GFSv16

commit 4c9978a8b0a98527d7c78a3da0a0a55e39cefed0
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Sep 1 18:48:44 2020 +0000

    modified:   checkout.sh to use gldas_gfsv16_release.v1.6.0

commit 595edcfaaf1372889c8d569e01ec4dfefb51c469
Merge: 8a593c8d 06bda7de
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Sep 1 17:30:08 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit ada0fb3155a57bdba074c84e1ab3d73eabb0e2f4
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Tue Sep 1 17:18:27 2020 +0000

    update module for cdo

commit 074f2782438471740453e356b856a4756e59c858
Merge: a1a3d69b 8a593c8d
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Sep 1 14:30:56 2020 +0000

    Sync with WAFS branch

commit a1a3d69ba40564f550053b99b4328ba41c7cc45d
Merge: 249b6ef7 06bda7de
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Sep 1 14:22:20 2020 +0000

    Sync merge with feature/gfsv16b

commit 8a593c8df03d8a879c5488fbd671fef94f5d867d
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Sep 1 14:09:49 2020 +0000

    Update to WAFS tag and added SENDDBN_NTC to both base configs

commit 5270ed831c0b3c428736cbd8a789a4d3cfdcc0fe
Merge: 95ec3329 eabda84f
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Sep 1 14:03:53 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit 06bda7dec74831951034b72c83abbb2d994ee539
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Sep 1 14:02:44 2020 +0000

    modified:   link_fv3gfs.sh to not link or copy
    0readme fix_chem fix_fv3  fix_sfc_climo
    which are not used by GFS.v16 and are of large size

commit eabda84f97c11251f672d95bb604ad0c50e8da18
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Sep 1 13:48:11 2020 +0000

    modified:   link_fv3gfs.sh  to remove chgres_cube.fd and chgres_cube.fd in sorc/link_fv3gfs.sh

commit 223492bf6c56c0491c0034dc1d4a0a3e6e97a607
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Sep 1 03:59:53 2020 +0000

    modified:   link_fv3gfs.sh to allow "fix" directories to be removed before rerunning
                link_fv3gfs.sh for RUN_ENVIR=nco case

commit 95ec3329e72a54b0dabdccdecd467972c4914dcd
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 31 18:57:32 2020 +0000

    Added WAFS jobs to free-forecast mode, updates for extending WAFS to fh120, and two bug fixes in link_fv3gfs.sh and hpssarch_gen.sh

commit 6f660d9a9a5758f3d74f87f170a95a26ca0c0e6a
Merge: 8da41916 3282a899
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 31 17:58:55 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16b-wafs

commit 3282a8996ab0510699932a53897b87730b2cc492
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 31 17:47:37 2020 +0000

    Renamed global-workflow-owned ex-scripts to remove ecf extension and updated other scripts which call those ex-scripts

commit 9cde3a41f34d0c2618e8fb06ff1276cec5378ef5
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 28 18:46:57 2020 +0000

    Remove UFS_UTILS ecf extensions

commit f7a92dbc1c3ad822d3b8e567967e91384631288d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri Aug 28 18:09:26 2020 +0000

    Issue #1:  (1) update earc.sh directory removal to be consistent with arch.sh, (2) update config files to be consistent with EMC real-time GFS v16 parallel

commit 249b6ef761fb41b5d102b282fccedeb827192dff
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 28 16:52:54 2020 +0000

    Remove ecf script name extensions from downstream wave scripts

commit 004a29f39204314159d2cbd028950cfaba07cf33
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 28 16:50:03 2020 +0000

    Add new downstream wave jobs to workflow

commit 8da4191644ff55f46e8f394e4e1d29641d3c117c
Merge: 8f97726a 6319bda4
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 28 16:42:11 2020 +0000

    Sync merge with feature/gfsv16b

commit 8f97726a4170d56dcaf6732ae141fae9aaebfd8d
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 28 16:39:50 2020 +0000

    Add new downstream WAFS jobs

commit 6319bda47548873acb8859d9a47d2ac6a6ef4c67
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 28 15:41:55 2020 +0000

    Issue #1 - update GLDAS and UPP workflow files for removal of ecf script extension

commit 8f7615c76f76611d748246a80d9286de7c4d3295
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 20:53:25 2020 +0000

    Issue #1:  remove ".ecf" suffix from DA scripts referenced in sorc/link_fv3gfs.sh

commit af754d1fa0aa4a521fcd5b4fc04eaa88d475dbff
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Aug 27 20:47:14 2020 +0000

    Issue #1: remove ".ecf" extension from DA exscripts (as per WCOSS Implementation Standards) referenced from parm/config files

commit a6e91b48b7024c83491fd1f93c6d7df8e3301af5
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 27 20:25:45 2020 +0000

    updates to resources for wave jobs

commit f0b9a98973b7983eadab51c7009723b5d0b4a564
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Aug 26 23:04:02 2020 +0000

    Issue #1:  update name of DA enkf chgres script in config.echgres

commit 01f33c498bf0b5c0d48486cd04dab9c93c721906
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Aug 26 20:58:29 2020 +0000

    Issue #1:  Rename DA enkf chgres job and script as per EE2 guidance

commit 7d3f37819aba17dc794d10f7453061802779b435
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Aug 26 18:35:59 2020 +0000

    Workflow changes for wave gempak and awips downstream jobs

commit 485632eafe37c1866011af1bd0a601fb1c7adc4c
Merge: 2946baad e191fd4b
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date:   Wed Aug 26 11:49:40 2020 -0400

    Merge pull request #3 from KateFriedman-NOAA/feature/gfsv16b-wave

    Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

commit e191fd4bb87af787feab486bf072fe4dce7f12f4
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Aug 26 15:47:49 2020 +0000

    Fixing wavepostbndpnt dependency in setup_workflow_fcstonly.py

commit 4641a72e1ced493c7ec5d837a3093908e388b5df
Merge: a1b08c92 25ae4899
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Aug 26 11:33:23 2020 -0400

    Merge pull request #119 from GeorgeGayno-NOAA/feature/gfsv16b

    enkf_chgres_recenter_nc.fd - Remove hard-coded vertical levels.

commit 25ae4899cee3dc3aeff1e36f0ac1d0b0773ca2f9
Author: George Gayno <George.Gayno@noaa.gov>
Date:   Wed Aug 26 14:25:36 2020 +0000

    feature/gfsv16b:  Add Cory's updates to build 'enkf_chgres_recenter_nc'
    on Cray.

    Issue #102.

commit 2946baad88d908b32793f542cab42f0c89adf009
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Wed Aug 26 13:44:06 2020 +0000

    cleaning up wave point post scripts

commit 3590e9a45e2b13b22ff3c3d4827907ddcf55eebf
Merge: 727c3ffd a1b08c92
Author: George Gayno <George.Gayno@noaa.gov>
Date:   Tue Aug 25 20:20:17 2020 +0000

    feature/gfsv16b:  Merge updates from authoratative feature/gfsv16b
    branch.

    Issue #112.

commit a1b08c92892278453f25c2530f8b8fb968af9a34
Merge: 45ad029b ce3816d3
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Aug 25 16:01:57 2020 -0400

    Merge pull request #116 from RobertoPadilla-NOAA/feature/gfsv16_wave_prdgen

    Feature/gfsv16 wave prdgen

commit ce3816d3e88b8d2de7472a214e66cb54aceca9a6
Merge: b0c91610 45ad029b
Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov>
Date:   Tue Aug 25 19:55:53 2020 +0000

    Merge remote-tracking branch 'upstream/feature/gfsv16b' into feature/gfsv16_wave_prdgen

    Issue #94 Adding prdgen for waves

commit 90181842fbb7a22479f12d3a67bcdc8fa4b8f669
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Tue Aug 25 19:02:22 2020 +0000

    rename wave post script

commit 1f15be0a8207d3117200bcc145a5ae66b7445ec3
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Tue Aug 25 19:01:41 2020 +0000

    remove gridded so can rename

commit 1fc5b368fe0cd438e2202b62de7753b7efed7af6
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Tue Aug 25 19:00:20 2020 +0000

    updates to boundary point

commit f0e3ae5c2cd441673a4a670618e87f050a12c9e9
Merge: 98d6c163 b74b21e7
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date:   Tue Aug 25 14:15:57 2020 -0400

    Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave

    Feature/gfsv16b wave

commit b74b21e71edbb62207ccfcafe4c6ed5b6d301cfe
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Aug 25 18:14:15 2020 +0000

    Remove extra space from line

commit 25e2cc4596213b39d2a3dc3ee8afda4a86e10d38
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Aug 25 18:12:04 2020 +0000

    Fix wavepostbndpnt dependency and increase wavepostbntpnt and wavepostpnt walltimes

commit 45ad029bad4367961e5eff987f27226b0ac78d5a
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Aug 25 13:40:45 2020 +0000

    Issue #1:  several minor changes

    * Externals.cfg and sorc/checkout.sh:  update to tag verif_global_v1.10.1

    * jobs/rocoto/arch.sh:  update ARCDIR cp to use new path to tracker output

    * scripts/run_gfsmos_master.sh.dell:  remove module purge from mos driver script

commit 0a85a36ef0784bebf96d2f97c24dd4c642ac23f1
Merge: d5861551 5190efb1
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Aug 25 09:20:42 2020 -0400

    Merge pull request #118 from GuangPingLou-NOAA/feature/gfsv16b

    Issue #117 Modufy Bufr station Hilo's grid point representation

commit 5190efb119c6eec6a7c67d90327dee4666307541
Author: Guang.Ping.Lou <Guang.Ping.Lou@noaa.gov>
Date:   Tue Aug 25 12:30:45 2020 +0000

    Issue #117 Modufy Bufr station Hilo's grid point representation

commit 98d6c16336e5b0a3241174c54b7631667a4f919d
Merge: 0eacf5e2 32bd57ef
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Mon Aug 24 22:27:39 2020 +0000

    Merge branch 'feature/gfsv16b-wave' of github.com:JessicaMeixner-NOAA/global-workflow into feature/gfsv16b-wave

commit 0eacf5e21c3149d2d922b4c2495e48fb2355e639
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Mon Aug 24 22:27:28 2020 +0000

    fix typos

commit b0c9161061302ccf4b890cceabe5b4eaecb67e61
Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov>
Date:   Mon Aug 24 22:25:05 2020 +0000

    Issue #94 changing native by interpolated grids for gempak

commit 8a68d3c6d6996f389609d5961f32f0db116797d1
Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov>
Date:   Mon Aug 24 21:47:44 2020 +0000

    Issue #94 removing the load of modulefiles and sending set.pdy to j-jobs

commit 32bd57ef2b390dbe73a744188a40ca4c42c306fe
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Mon Aug 24 20:35:39 2020 +0000

    updating WCOSS work around for CDO, CDO_ROOT is missing from module file

commit a2d06bb0bf82ee48899cb26ea9abf2331b543107
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Mon Aug 24 18:55:02 2020 +0000

    adding module use for cdo module on wcoss dell

commit e5c9f037bd82ed4bc72cf11241d7c053160ff5b9
Author: jessica.meixner <Jessica.Meixner@noaa.gov>
Date:   Mon Aug 24 18:29:36 2020 +0000

    updates for new weights file and adding cdo module for wave prep

commit 96655fbe5b5daf130d4a9a458ce47059c047376a
Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov>
Date:   Mon Aug 24 16:56:37 2020 +0000

    Issue #94 removing modulefiles load from j-jobs

commit 7f9344f777075ce3220d9a9fccba74c07e4f40e2
Author: wx21rph <Roberto.Padilla@m71a2.ncep.noaa.gov>
Date:   Mon Aug 24 14:32:26 2020 +0000

    Issue #94 Solving reviewers comments

commit c9598a3207bb06cbd7d2619d97f723f6511da9a4
Merge: bf97710b 92a2a43d
Author: Jessica Meixner <jessica.meixner@noaa.gov>
Date:   Mon Aug 24 10:12:43 2020 -0400

    Merge pull request #1 from KateFriedman-NOAA/feature/gfsv16b-wave

    Adding new wavepostbndpnt and wavepostpnt jobs

commit 92a2a43db190982944b4166b929a791a1b0b0750
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 24 14:06:23 2020 +0000

    Adding new wavepostbndpnt and wavepostpnt jobs

commit bf97710bece30195679740b0de2b32e0adc6c3c6
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Fri Aug 21 00:20:56 2020 +0000

    updating wave post scripts for restructured format

commit a914521cec478667191b365e2a2a62e3553e0ff7
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 23:52:47 2020 +0000

    updates to JJOBs for wave post point for new structure

commit 1f195f8d432072f4e4f66406ea6b09256a185d2b
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 15:20:28 2020 +0000

    changing exit 0 to exit number for FATAL errors in ice prep for waves

commit f836a7869dbb88badd93fcd9d08314284eee4f96
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 15:17:28 2020 +0000

    updating error message and exit if there is no current
    input file

commit 529cc3692f4fc003295584e761279be3c9405b68
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 14:50:50 2020 +0000

    update WAVE_PREP so that currents do not check for previous 24 hour
    so that parallels will be reproducible
    also deleted unused variable

commit 57c4258ba73778fe95118ebfae98c4bbf012ae37
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 14:09:22 2020 +0000

    renaming wave job and scripts

commit 1626cb2f90bfea5663f198cfc2ac2916a9200e1a
Merge: da292216 d5861551
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 14:02:54 2020 +0000

    Merge remote-tracking branch 'EMC/feature/gfsv16b' into feature/gfsv16b-splitwavepost

commit da2922163922f4b4b14dba78dba36e9eced3a2c5
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Thu Aug 20 13:50:15 2020 +0000

    update jobs for waves

commit a1c456f267ddf701aa47ad33fd231a2f1ae0bf99
Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov>
Date:   Wed Aug 19 20:09:47 2020 +0000

    Issue #94  renaming the J-jobs

commit 036617c8a9b5da765b82c276f7b087aa4e16d679
Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov>
Date:   Wed Aug 19 14:24:01 2020 +0000

    Issue #94  Updating the modulefiles for waves-prdgen

commit d5861551ae5b1fe2c2b00802159a42f7fde06357
Merge: 9b923ac3 0e0699aa
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Aug 19 09:49:08 2020 -0400

    Merge pull request #109 from NOAA-EMC/feature/gfsv16b-restructure

    GFSv16 restructure for new $COMPONENT subfolder

commit 1e76093c8554c3ccb87a7ed243f738f5763ca5da
Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov>
Date:   Wed Aug 19 13:47:44 2020 +0000

    Issue #94  adding waves-prdgen to gfsv16

commit 0e0699aac7cb00988c999546dcdf3a52b11706e3
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Aug 19 13:47:29 2020 +0000

    Issue #94 - fix to messed up shebang in setup_expt_fcstonly.py

commit c7a708fd54ffe60c6259f35c4230e6e73ecd6f77
Author: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov>
Date:   Tue Aug 18 21:16:19 2020 +0000

    Issue #94 adding waves-prdgen for gfsv16

commit 0b2744e53a35c570178b7e6cd7ede72b6255c579
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Fri Aug 14 17:36:31 2020 +0000

    Issue #94 - pull in two fixes for wave job setup in free-forecast mode

commit 4888001e76d24277b3a75d1d520945383f49d456
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Fri Aug 14 18:55:40 2020 +0000

    updates for wave scripts to split them, also added updates from
    GEFS branch to add extra error checking

commit 00dc1973010b68e65e176c90a1eeaef359b7beae
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Fri Aug 14 17:36:31 2020 +0000

    Issue #94 - pull in two fixes for wave job setup in free-forecast mode

commit fe849e918b30e6a9ca22ebe1a81e350afc4ed6cf
Merge: 0c06cda7 9b923ac3
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Aug 13 18:49:52 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 9b923ac308841d7accfc6ed2a4ef9733dce2305e
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Aug 13 18:37:51 2020 +0000

    Issue #1 - update to prod_util version (1.1.3 -> 1.1.4) on WCOSS-Dell for post P1/P2 removal

commit 0c06cda7dd667e936e8aa71fc1c584a4839094ba
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 10 18:50:44 2020 +0000

    Issue #94 - update CFP module version on WCOSS-Dell

commit b73d25224d8208291048b774a91497928b051713
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 10 17:58:55 2020 +0000

    Issue #94 - update WCOSS-Dell module versions to prod_util and EnvVars

commit 485ee56c1e772e8efa944ee9a3f350130d49a718
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Aug 10 13:00:42 2020 +0000

    Issue #94 - fix AWIPS file dependency

commit bdaa28fbdc2372ed85320a4b044a33d350e2e7be
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Aug 7 13:34:22 2020 +0000

    Issue #94 - updates for FSU tracker

commit 4cee6f65467c34e171ed3e0bdc72458a875e5e21
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Aug 5 17:14:04 2020 +0000

    Issue #94 - adding -o flag to checkout.sh for optional GTG checkout with EMC_post

commit 563d2931378c3d6276212cc9c4e2a4e9a286589c
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Aug 4 18:19:47 2020 +0000

    Issue #94 - small fix to updated UFS_UTILS part of link_fv3gfs.sh

commit 8a1fea478bcfdec3ad436e77fdfe8c601a050c77
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 30 18:27:57 2020 +0000

    Issue #94 - move UFS_UTILS link script step from build_ufs_utils.sh to link_fv3gfs.sh based on feedback from GEFS team

commit f54d938ac8faf3c5d0362770b645dcef57b43c30
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 29 14:28:03 2020 +0000

    Issue #94 - reverting GSI and EMC_gfs_wafs checkouts back to authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available

commit d3866af6cc8060f88b3bd780b7f6a6f52a8ecba0
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 29 13:39:07 2020 +0000

    Issue #94 - add default to fhmax in vrfy.sh for when prior tasks disabled and set new path to restructured gfsmos

commit 9c2791ed037d62f35aa33875c20de8ac3f823337
Merge: e8a714b2 d1751309
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 27 14:44:59 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit e8a714b2fa20cce87ed018b3a9215bef37ee0d10
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 27 14:37:34 2020 +0000

    Issue #94 - retire BASE_SVN

commit 5867d4b3de7b6ee7d8f913d573b4a0f44d973320
Author: Jessica.Meixner <Jessica.Meixner@noaa.gov>
Date:   Fri Jul 24 15:00:41 2020 +0000

    updates from gefs post workflow: updates for re-run case
    as well as extra error messages

commit 03daf01d440e702deccfcd246db069783f2c513d
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Jul 24 14:14:25 2020 +0000

    Issue #94 - removing new install script, will introduce via another branch, needs more testing

commit 9c0765cec06ea0f80528cba722884a4971beb345
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Jul 24 14:08:36 2020 +0000

    Issue #94 - add  to gempak scripts and cleanup based on PR feedback

commit fb70d6fb7a2407bd17c2c587224e66401a6cf1c0
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 23 14:35:56 2020 +0000

    Issue #94 - updating GLDAS and EMC_post tags in Externals.cfg

commit 3bfdc01419b1ea8748f8ce7ebcf00ac6b520f8d7
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 23 14:34:28 2020 +0000

    Reverting link_fv3gfs.sh, will commit in different changeset

commit d1751309fc1999cdc4fdbc603e429ee61fbcf38c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jul 23 11:20:15 2020 +0000

    Issue #1:  refactor CFP in DA sections of HERA.env and WCOSS_DELL_P3.env

commit 821c93cae54d9fa24887cbe2072df4f63aeadb7d
Merge: 95ce8235 145f8105
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jul 21 17:15:43 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 95ce823552c20aa15426c4c98feb3c7d147ec89e
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Tue Jul 21 14:10:09 2020 +0000

    Issue #94 - new GLDAS tag with atmos directory

commit 145f81056802cb7246a50f7951c2e191a994032f
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jul 20 21:09:40 2020 +0000

    Issue #1:  add enkf member sfcf006.nc to enkf tarballs

commit ab89088d3a59ee5d5389fa8e527e0444692c1542
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 20 19:07:02 2020 +0000

    Issue #94 - component checkout updates to use forks and new UPP tag

commit 4eec6641424d3947ae792f632f9b401bb569173a
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 20 13:31:23 2020 +0000

    Issue #94 - fix dirpath in ush/hpssarch_gen.sh

commit 727c3ffdeee5b77e65b6665b2cf34b6a30736bbc
Author: George Gayno <George.Gayno@noaa.gov>
Date:   Fri Jul 17 18:27:26 2020 +0000

    feature/gfsv16b  This commit references #102.

    Some cleanup to enkf_chgres_recenter_nc.

commit d0378245016ba506b9e57a35dcaed8ce10830a9a
Author: George Gayno <George.Gayno@noaa.gov>
Date:   Fri Jul 17 15:59:59 2020 +0000

    feature/gfsv16b  This commit references #102.

    Initial updates to enkf_chgres_recenter_nc to output any
    number of vertical levels.  Turn off horizontal interpolation
    if input and output grids are the same.

commit 273c5353bc310b22459fe605662c07922a41e4f4
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 16 17:52:43 2020 +0000

    Issue #94 - revert RSTDIR_WAVE if-block compression to retain breakpoint restarting

commit 3d9f0dc81a63b5d1b54981314fac36a82119e811
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 16 17:19:21 2020 +0000

    Issue #94 - remove COMPONENTatmos and COMPONENTwave, use COMIN[COMOUT]atmos[wave] instead

commit 19d3f72b5f6f1ec145cf95e47c1fe9ca970d40cb
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 16 16:05:56 2020 +0000

    Issue #94 - updates to wave scripts based on NCO feedback

commit 0056b413a65aea9700561c5a9b07946fb34be6b5
Merge: 987d8cf5 d7425d02
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Thu Jul 16 13:35:13 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 987d8cf5621e8c302d0f9a7941f4d74222fbf218
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 15 17:50:34 2020 +0000

    Issue #94 - added  and [wave] back in after feedback from Steven Earle, also renamed the wave scripts to match the correct convention

commit 49825b3b93080b70b56752477a9406e1765ecdf3
Author: BoiVuong-NOAA <Boi.Vuong@noaa.gov>
Date:   Tue Jul 14 23:04:08 2020 +0000

    GitHub Issue#94 update gempak's ush scripts

commit d7425d02bb9027fe3ea5ceb31d515d70dddb4ec4
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jul 14 19:50:54 2020 +0000

    Revert "modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos"

    This reverts commit 49772711c37d74740427c241a477afe21ee62d7c.

commit 49772711c37d74740427c241a477afe21ee62d7c
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jul 14 19:45:32 2020 +0000

    modified:   config.base.emc.dyn to use obsproc_prep.iss70457.netcdfhistory_atmos

commit 8b0f57fdfd4a8710e176f0035356fb01d781dd70
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Jul 13 23:43:55 2020 +0000

    modified:   ../Externals.cfg  and   checkout.sh to check out
                UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
                Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
                is now bounded from the surface up to 1 hPa instead of the model top to
                avoid producing erroneous large CAPE and CIN values.

commit 37e0f57d948fa98c66fcc9d9695de2769a4a38d2
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jul 13 17:26:52 2020 +0000

    Issue #1 - add mod_icec.sh to UPP ush script symlinking in link_fv3gfs.sh

commit 663542ea2219eae322437058693cae3ade14e125
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Jul 10 20:01:17 2020 +0000

    Issue #94 - fix dependencies with  in the path

commit 866c4c4cf1a2cd177fed81396ddb40e657e8d55b
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Fri Jul 10 15:22:33 2020 +0000

    Issue #94 - convert  variables into hard-coded values per feedback

commit d57fc02801232de745e1c66b6cb0b459218dc042
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jul 8 22:59:35 2020 +0000

    modified:   checkout.sh to checkout model tag GFS.v16.0.9

     1.   WW3 update: write all restart files in a sub-directory restart_wave
     2.   Port production/GFS.v16 to Orion (#129)
        * Update FV3 submodule
        * Update NEMS submodule
        * Add 'ulimit -s unlimited' to Orion job card template
        * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
        * Update modulefiles/orion.intel/fv3
        * Update regression test configuration on Orion (for gfs_v16)
        * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
        * Update NEMS submodule (point to NOAA-EMC/NEMS)

commit 233f9f615ab1d5cee29c45143655978112bb79fe
Merge: 506e3bf4 ae7dbdb2
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 8 19:44:40 2020 +0000

    Issue #94 - Sync merge branch 'feature/gfsv16b' into feature/gfsv16b-restructure

commit 506e3bf4d627093b06bc0a2d5cac63f99767742f
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Wed Jul 8 17:43:14 2020 +0000

    Issue #94 - initial add of COMPONENTatmos variable to scripts

commit ae7dbdb2a37daabaa178b8924bad22684a673d4e
Merge: 6e73de0c 58fb7954
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Wed Jul 8 11:30:07 2020 -0400

    Merge pull request #96 from NOAA-EMC/feature/gfsv16b_restart

    modified:   exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability

commit 58fb79548b2ac34a477b4520ca99ce32280b00fd
Merge: 4a1cf2b6 6e73de0c
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jul 7 15:58:25 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 6e73de0ce5cd82c9e97d8078dd1ddd253f05a258
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jul 7 15:03:09 2020 +0000

    Issue #1:  set g2o1_obtype_conus_sfc in config.metp to "ONLYSF ADPUPA"

commit 22ad770016b8a61bb672f1f76d62cb3d133f247c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jul 7 13:47:26 2020 +0000

    Issue #1:  update sorc/checkout.sh to checkout verif_global_v1.9.0

commit 4a1cf2b6f45a76b91fbfa048def2cd647598e154
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon Jul 6 23:59:03 2020 +0000

    further updated exglobal_fcst_nemsfv3gfs.sh to use restart_wave directory for gdas cycle  as well

commit 5fe1a217d28e6710502b9524d3e3cce035364c37
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Sat Jul 4 19:43:29 2020 +0000

    modified:   jobs/JGLOBAL_FORECAST   parm/config/config.wave   scripts/exglobal_fcst_nemsfv3gfs.sh
        add WW3 break-point restart capability and clean up forecast script.

commit 3fe6f9fc3aff9cff75aa6179cc545e635d28f312
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 29 19:44:12 2020 +0000

    Issue #94 - commit initial version of new installation script

commit 30e56f2e84c6f1a66dc73db53cabc898b657374c
Author: kate.friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 29 19:41:31 2020 +0000

    Issue #94 - generalization updates to link script

    - change 'nco' mode to 'prod' mode
    - change 'emc' mode to 'dev' mode
    - update machine values to match target names

commit 28b1faf03c5ad12e4e9a44f1d02c754f1441ebc7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:31:18 2020 +0000

    modified:   config.vrfy to add
        elif [ $machine = "HERA" ] ; then
            export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

commit 61f4a52e299482687d84ef6686e6a65f64fe57f3
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 26 02:21:33 2020 +0000

    corrected a typo in  hpssarch_gen.sh
    -     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
    +     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

commit b10a9306b732e543d2be3b932d556ebcdcbe8a5e
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 25 20:25:30 2020 +0000

    modified:   config.vrfy to point a different syndat directory on Hera
           export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
           export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

commit b8192e54988f2fb2f4cda0510af02a090dfdda2e
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 25 18:20:01 2020 +0000

    Issue #1:  HPSS archive and MOS script changes

     * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

     * add ensemble resolution analysis to HPSS gdas tarball

     * allow variable range to be externally set in run_gfsmos_master scripts

commit e599c368a2d55018e4a1567717efd7ffa09f14d9
Merge: 99277ae3 1e56eddb
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Wed Jun 24 14:16:22 2020 -0400

    Merge pull request #93 from JessicaMeixner-NOAA/bugfix/exiterr

    fix for exiting properly with error for wave prep/init scripts

commit 1e56eddb055b1414385e276ac73255d3ede9e9e9
Author: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov>
Date:   Wed Jun 24 12:36:53 2020 -0500

    fix for exiting properly with error for wave prep/init scripts

commit 99277ae34ef50454fa15e7e28b564c2e34e3406c
Merge: 14dd3c94 4f8d5a5f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 16:05:16 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 4f8d5a5f28c7120905fe36e9254f0199da986188
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:57:26 2020 -0400

    Update README.md

    Remove use/mention of manage_externals until checkout.sh is retired.

commit 14dd3c94938b0e69601e25a42104b2fc23944ebd
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 23 15:53:11 2020 +0000

    modified:   Externals.cfg and  sorc/checkout.sh to check out model tag GFS.v16.0.7
       and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

    1) Inline POST Issues #136 and $142
       * Update ceiling height calculation for global FV3.
       * add low,middle,high instantaneous cloud fraction
       * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
       * fix a bug in initializing DBZI
       * output mixed layer CAPE/CIN
       * remove simulated GOES-12 brightness temperature.
       * change the names of time averaged low/mid/high cloud fractions in grib2 files
         from "TCDC" to "LCDC/MCDC/HCDC", respectively.

    2) Model Issue #152
       * update in-line post control files
       * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

commit dd76002425a03905bfc6ef63d3f43a6813814497
Merge: df89cc80 dd599eaa
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Tue Jun 23 11:34:40 2020 -0400

    Merge pull request #91 from christopherwharrop-noaa/feature/fix_externals

    Update version of upp in Externals.cfg to be consistent with sorc/che…

commit dd599eaa4f379e1eb8fc5e057f7904b0e6290d48
Author: Christopher Harrop <Christopher.W.Harrop@noaa.gov>
Date:   Tue Jun 23 15:25:08 2020 +0000

    Update version of upp in Externals.cfg to be consistent with sorc/checkout.sh

commit df89cc800d3c479c132a5e679a2562af91b32f62
Author: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com>
Date:   Fri Jun 19 18:40:26 2020 -0400

    Update config.resources

    Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

commit ff8cd28365377f0ceed87ff8b4b9a9b4b6e91368
Merge: 1dd83b81 965ff420
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:07:59 2020 +0000

    Issue #1:  merge branch 'feature/chgresfcst' at 965ff42 into feature/gfsv16b

commit 965ff4203f132c6b032398a7a56494329714247c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu Jun 18 20:02:23 2020 +0000

    Issue #85:  update DA checkout to point at release/gfsda.v16.0.0

commit 71d714119960feed1f0807708cdf85677ab81d73
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue Jun 16 20:11:33 2020 +0000

    Issue #85:  (1) rename "chgresfcst" as "echgres", (2) add chgres variables to env

commit 1dd83b818e9f2babbd11b762951721cf2a4c415e
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 16:07:45 2020 +0000

    modified:   run_gfsmos_master.sh.dell to still set range=both as the default for running the real-time parallel

commit eb0e3b4d009047251c535eea6fdc5958e58e68f7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 14:43:29 2020 +0000

    update  checkout.sh to switch back to post version upp_gfsv16_release.v1.0.8.   1.0.9 still has issues.

commit dfc76f0715a29e52e4d7133a8259c492229a5c22
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Tue Jun 16 13:32:01 2020 +0000

    Issue #1 - sync Externals.cfg with checkout.sh update for FV3 GFSv16.0.6 tag

commit 7078bb5c680d54297101fae573579be24411a94a
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Tue Jun 16 13:22:43 2020 +0000

    modified:   scripts/run_gfsmos_master.sh.dell to set default verification type o short.
    modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

commit 15d5bed4119b067905f5a4bf47656557f2211883
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 15 20:47:47 2020 +0000

    Issue #85:  add cfp option to chgresfcst; enable threads with chgresfcst

commit d8782697fa698c00daa242a656246cf5f5d9b537
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Mon Jun 15 16:00:35 2020 +0000

    Issue #1 - update Externals.cfg to match updates to checkout.sh

commit a2bd621727701e9526feccc7ce8ebd43be31860f
Merge: 22b735d3 295cd05f
Author: Kate Friedman <kate.friedman@noaa.gov>
Date:   Mon Jun 15 11:57:14 2020 -0400

    Merge pull request #84 from NOAA-EMC/feature/gfsv16b_herawavepost

    Adapting wavepostsbs for running on Hera

commit 295cd05f306e4d70d09880a41fd60fadce74bab3
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Mon Jun 15 11:53:13 2020 -0400

    Update exwave_post_sbs.sh

    Removing obsolete nm variable entries

commit 22b735d310413989568dca4b30d19eadcd4c3fdb
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri Jun 12 20:06:49 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9

    output cloud ceiling height and instant total cloud fraction.
    output instant cloud fraction at low/mid/high cloud layer.
    correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
    output radar reflectivity at 1/4 km above ground and model layer 1/2.
    output mixed layer CAPE/CIN.
    Remove simulated GOES-12 brightness temperature from gfs product.
    Add the bug fix of initializing DBZI from Ruiyu.

commit 10ce1d4140c7c0fe795ded39e1fa550e0c202c59
Author: Kate.Friedman <Kate.Friedman@noaa.gov>
Date:   Thu Jun 11 18:42:22 2020 +0000

    Issue #1 - Hotfix to update anaconda module contrib path on Hera

commit 58d1139c196f92bd4bb149008a8d61eb6457fb3c
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu Jun 11 02:44:41 2020 +0000

    Adapting wavepostsbs for running on Hera

commit c330e60197c38acb724cfdf4a30a20417a6618b4
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 21:17:00 2020 +0000

    add checkout.sh to test on Dell

commit 201609b2d43acd13a08bf1d5ab2251db90a11d32
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 20:51:51 2020 +0000

    Commit changes from debugging addition of chgresfcst on hera

commit 4405a2c74c8b5a40ee6edd7b4c2faba9bd41b59c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 10 14:36:03 2020 +0000

    Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

commit fc3066c2b7a5edd9f0d510b88f8542b07b8a8589
Author: CoryMartin-NOAA <cory.r.martin@noaa.gov>
Date:   Wed Jun 10 14:19:07 2020 +0000

    First draft to add chgresfcst to rocoto workflow

commit 9f2e4ecfe5799e13a4f6b9e80f7ff3e7b4a3633c
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:34:07 2020 +0000

    Issue #1:  correct typo in scripts/exwave_prep.sh

commit 5a8b8f2e80532b7e446c51a69dcb83c7a212395d
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Mon Jun 8 00:15:31 2020 +0000

    Issue #1:  check for existence of 0p50 and 1p00 pgrb files before attempting to write to HPSS

commit a7306aa93d537da5b165297e0dc34ba88856d4c7
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Sun Jun 7 23:22:53 2020 +0000

    modified:   jobs/rocoto/post.sh
       wait for 5 minutes if forecast history file does not exist before exit

    modified:   modulefiles/module_base.hera
       use GV's temporal build of  netcdfp/4.7.4 and esmflocal/8.0.1.08bs on HERA

    modified:   parm/config/config.base.emc.dyn
       add restart_interval_gfs=0 to config.base. It is used by config.fcst and config.wave

    modified:   parm/config/config.fcst
       -- fix a bug related to setting npe_wav for gfsfcst.
           if [ "$CDUMP" = "gfs" ]; then npe_wav=$npe_wav_gfs ; fi
       -- set  io_layout="4,4" for writing gfs restart files

    modified:   parm/config/config.wave
       set WAVE restart frequency based on restart_interval_gfs (by H. Alves).

commit 1082885b082e8a837aef095deb6a3343fca26cb3
Merge: 968b9860 bf5a5c44
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 20:26:47 2020 -0400

    Merge pull request #83 from NOAA-EMC/feature/gfsv16b_restart

    revive GFS forecast break-point restart capability with IAU turned on

commit bf5a5c44bdebff5663225e9e9548ba83f498f7cd
Merge: b27a01db 968b9860
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 23:36:52 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b_restart

commit 968b98609fe2016518f3adcc6b178bdca0b73bcf
Merge: 9b36cfde dc512dd6
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:20:53 2020 +0000

    Merge branch 'feature/gfsv16b' of https://github.com/NOAA-EMC/global-workflow into feature/gfsv16b

commit 9b36cfde2032e9296cc7567704e1274560b2897e
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:12:56 2020 +0000

    Unify output path in gfs_bfr2gpk.sh

commit 7675368c3f7f3942b7f8a57bad4c29a38cef48fa
Author: Guang Ping Lou <guang.ping.lou@noaa.gov>
Date:   Thu Jun 4 19:11:23 2020 +0000

    remove station elevation adjustment to T,Q and evaporation bug fix

commit dc512dd68df088361c340ac01ec3c8130707ffd1
Merge: a7b25a3b 987c32af
Author: Fanglin Yang <fanglin.yang@noaa.gov>
Date:   Thu Jun 4 12:55:33 2020 -0400

    Merge pull request #82 from NOAA-EMC/feature/gfsv16b_wavehera

    Adjustment to wave workflow for running wave component on Hera

commit 987c32af7c7e94c53f50d20e1ad3c8b27e2c9afb
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Thu Jun 4 12:08:05 2020 -0400

    Updating checkout to ufs-weather-model GFS.v16.0.5

commit a7b25a3bb0b7b5f1b8a15204ff1e7c061ea1199a
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Thu Jun 4 14:59:22 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.8.0

commit 0acee674759a5e2c8fbd4ec7b1cdd0459f95e2bd
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Wed Jun 3 20:10:09 2020 +0000

    Issue #1:  remove redundant entry from config.ediag; update checkout.sh to pull GFS v16 DA from github

commit b27a01db1516f9aa229e75957885ffa2125d31d6
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 16:58:29 2020 +0000

    modified:   parm/config/config.fcst
    modified:   scripts/exglobal_fcst_nemsfv3gfs.sh

    GFS forecast restrat capability from a breakpoint is no longer working
    with IAU turned on.  This function has been overhauled to make it more
    general and works for cases with and without IAU

commit ba895481be53906878f58c2998a398bc59870ea2
Author: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com>
Date:   Wed Jun 3 09:59:35 2020 -0400

    Update JWAVE_PREP

    Removing lines using for testing presence of files while debugging.

commit bb79d7a33c423770f4972c9c643c5dfa7fb0f3be
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed Jun 3 02:45:33 2020 +0000

    Fixing a few minor bugs in wave_tar.sh after testing on WCOSS

commit 8dc2e255e77a55c0f7d90a5018f769ade1e83a9f
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed Jun 3 01:41:18 2020 +0000

    add new file:   run_gfsmos_master.sh.hera

commit 3393cac802b289cb9b6867c003ff27ef1711327a
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Thu May 28 00:01:51 2020 +0000

    Correcting minor bug in wave_prn_cur.sh Adjusting indents in exwave_prep.sh Adding defaults for current processing in conif.waveprep.

commit 32c5f29b62cf747662909ff50a6bf8f327127a09
Merge: 49abb906 e87b5a18
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:40:34 2020 +0000

    Merging latest feature/gfsv16b branch into feature/gfsv16b_wavehera

commit 49abb9068effc5aeeba8f861f44207b67ff442c9
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Wed May 27 17:36:12 2020 +0000

    Adding comment indicating how to regenerate cdo interpolation weights.

commit e87b5a18f9dbad2230b9d3324f0c48a7b25d9b62
Author: wx20ha <henrique.alves@noaa.gov>
Date:   Wed May 27 02:01:57 2020 +0000

    JWAVE_PREP updated to use CDO_ROOT defined in config config.waveprep updated to default to WCOSS rtofs operational cdo if no module found wave_prnc_cur.sh bug fixed now provides proper fhr in temp file names exwave_prep.sh adjusted for WCOSS and Hera.

commit 70d71310132813c1066a9b0f881ef686602a23c4
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:39:33 2020 +0000

    Issue #1:  remove "_break" from commented out lines in config.anal and config.prep.  "_break" will cause failue if line active

commit 914cb8dff96e45e690c8e1a2932c8d846afb1655
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 20:37:27 2020 +0000

    Issue #1:  correct typo in parm/config/config.anal

commit 2e12e63b13533a8a1b741bf55cbbaba49beb14cc
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 19:18:57 2020 +0000

    Issue #1:  update config.anal logic to point ABIBF at the correct GDA directory

commit 38cd82133b64af289648ca5e88fde1ac3dcaeab0
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Tue May 26 18:04:59 2020 +0000

    Issue #1:  update config files

     * parm/config/config.anal - add logic to use correct global_convinfo.txt prior to GFS v15.3 implementation (2020052612)

     * parm/config/config.awips - set NAWIPSGRP to equal NPOSTGRP (config.post)

     * parm/config/config.fcst - add double quotes around CDUMP on levs test to prevent setup_workflow.py runtime error

commit 0dff61f103bab78f9d2426599f976dc318eff4e0
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 25 03:08:27 2020 +0000

    modified:   config.fv3 to reduce tasks assigned to the WAVE component.  70 tasks at C768 is adequate for wave.

commit 20ef779fd90a267affc0e80ae1f8a3f64afd2f8d
Author: henrique.alves <Henrique.Alves@noaa.gov>
Date:   Fri May 22 19:52:55 2020 +0000

    Redefining mpmd command for working on Hera with slurm Adapting wave scripts to execute mpmd command on Hera Adjusting wave_prnc_cur.sh for properly catting files on Hera

commit e248236b233b6bcf2dc008006a82ccd459d7e3f3
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Fri May 22 15:23:59 2020 +0000

    modified:   config.fcst to set
    if [ $LEVS = "128" -a $CDUMP = "gdas" ]; then
    ...

    lheatstrg=".false."

commit 96460e6e5f4b09b9fd10d39550bf022dc62c37ab
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Fri May 22 13:02:06 2020 +0000

    Issue #1:  replace "nawips" with "gempak" in hpssarch_gen.sh path to gfs sfc and snd files

commit 7222f84041f2a2f221e85d6543657f229408328c
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Thu May 21 14:09:36 2020 +0000

    modified:   checkout.sh to check out modle tag GFS.v16.0.4. changes include:
           1.  Remove constraints on mixing length and background diffusitivity over inversion layers on land
           2.  Enhance mass flux for deep convection, hence to increase subsidzing warming to reduce
               cold bias in the lower tropospehre
           3. Fix a RRTMg solar radiaiton bug which has impact in SW abosrption in the UV region in
              the upper atmospehre.

commit 4fa08a77e59660f4b58279375a83d179c891b385
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Wed May 20 01:20:21 2020 +0000

    modified:   HERA.env to add
        export CFP_MP="YES" # For analdiag with SLURM

commit 9f7df9d3552fd971cde09148bc392ad93bf104e0
Author: fanglin.yang <fanglin.yang@noaa.gov>
Date:   Mon May 18 15:06:19 2020 +0000

    modified:   checkout.sh to check out upp_gfsv16_release.v1.0.8
       1) Add configuration for Orion.
       2) Make fields at isobaric levels have 41 vertical levels for all forecast hours and analysis in pgrb2 dataset.
       3) Remove SPFH at isobaric levels from pgrb2b dataset.

commit 5e4a1335ef3feb0242245b5661f22650a0a2e576
Author: Mallory Row <mallory.row@noaa.gov>
Date:   Fri May 15 13:08:25 2020 +0000

    modified: checkout.sh to check out METplus verification tag verif_global_v1.7.2
zhanglikate pushed a commit to zhanglikate/global-workflow that referenced this issue Oct 6, 2022
@SamuelTrahanNOAA
Cellular automata perturbations of emissions (NOAA-EMC#85)
99b900f 
This adds cellular automata perturbations of emissions. It points to a new gsl/develop-chem branch of stochastic_physics.
TerrenceMcGuinness-NOAA added a commit that referenced this issue Jun 8, 2023
@TerrenceMcGuinness-NOAA
Merge pull request #85 from TerrenceMcGuinness-NOAA/feature_1643_badges
87923b7 
Feature 1643 badges
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