Issue NOAA-EMC#5 - Sync merge branch 'feature/gfsv16b' into port2orion

* feature/gfsv16b:
  modified:   checkout.sh to check out upp_gfsv16_relaese.v1.0.9
  Issue #1 - Hotfix to update anaconda module contrib path on Hera
  Issue #1:  update parm/config/config.base.emc.dyn to be consistent with GFS v16 real-time parallel config.base

Conflicts:
	parm/config/config.base.emc.dyn

modulefiles/module_base.hera

@@ -32,7 +32,7 @@ module load  esmflocal/8.0.1.08bs
 #module load esmf/8.0.1bs08
 
 # python
-module use -a /contrib/modulefiles
+module use -a /contrib/anaconda/modulefiles
 module load anaconda/2.3.0
 
 # waveprep

parm/config/config.base.emc.dyn

@@ -52,7 +52,10 @@ export DO_GEMPAK="NO"
 export DO_AWIPS="NO"
 
 # NO for retrospective parallel; YES for real-time parallel
-export REALTIME="NO"
+#  arch.sh uses REALTIME for MOS.  Need to set REALTIME=YES
+#  if want MOS written to HPSS.   Should update arch.sh to
+#  use RUNMOS flag (currently in config.vrfy)
+export REALTIME="YES"
 
 
 ####################################################
@@ -66,8 +69,8 @@ export HOMEgsi="$HOMEgfs"
 export FIXgsi="$HOMEgfs/fix/fix_gsi"
 export HOMEfv3gfs="$HOMEgfs/sorc/fv3gfs.fd"
 export HOMEpost="$HOMEgfs"
-export HOMEobsproc_prep="$BASE_GIT/obsproc/gfsv16/obsproc_prep.iss70457.netcdfhistory_new"
-export HOMEobsproc_network="$BASE_GIT/obsproc/gfsv16/obsproc_global.iss71402.supportGFSv16"
+export HOMEobsproc_prep="$BASE_GIT/obsproc/gfsv16b/obsproc_prep.iss70457.netcdfhistory"
+export HOMEobsproc_network="$BASE_GIT/obsproc/gfsv16b/obsproc_global.iss71402.supportGFSv16"
 export HOMEobsproc_global=$HOMEobsproc_network
 export BASE_VERIF="$BASE_SVN/verif/global/tags/vsdb"
 
@@ -80,6 +83,8 @@ export KEEPDATA="NO"
 export CHGRP_RSTPROD="@CHGRP_RSTPROD@"
 export CHGRP_CMD="@CHGRP_CMD@"
 export NEMSIOGET="$HOMEgfs/exec/nemsio_get"
+export NCDUMP="$NETCDF/bin/ncdump"
+export NCLEN="$HOMEgfs/ush/getncdimlen"
 
 # Machine environment, jobs, and other utility scripts
 export BASE_ENV="$HOMEgfs/env"
@@ -95,6 +100,9 @@ export EXPDIR="@EXPDIR@/$PSLOT"
 export ROTDIR="@ROTDIR@/$PSLOT"
 export ROTDIR_DUMP="YES"                #Note: A value of "NO" does not currently work
 export DUMP_SUFFIX=""
+if [[ "$CDATE" -ge "2019092100" && "$CDATE" -le "2019110700" ]]; then
+    export DUMP_SUFFIX="p"              # Use dumps from NCO GFS v15.3 parallel
+fi
 export RUNDIR="$STMP/RUNDIRS/$PSLOT"
 export DATAROOT="$RUNDIR/$CDATE/$CDUMP"
 export ARCDIR="$NOSCRUB/archive/$PSLOT"
@@ -202,8 +210,8 @@ export DO_GLDAS="YES"
 export gldas_cyc=00
 
 # run wave component
-export DO_WAVE="YES"
-export WAVE_CDUMP="gdas"
+export DO_WAVE=YES
+export WAVE_CDUMP="both"
 
 # Microphysics Options: 99-ZhaoCarr, 8-Thompson; 6-WSM6, 10-MG, 11-GFDL
 export imp_physics=11
@@ -257,9 +265,11 @@ export binary_diag=".false."
 export DO_METP="YES"                  # Run MET+ jobs
 
 # Archiving options
-export HPSSARCH="NO"         # save data to HPSS archive
+export HPSSARCH="YES"        # save data to HPSS archive
 export ARCH_CYC=00           # Archive data at this cycle for warm_start capability
 export ARCH_WARMICFREQ=4     # Archive frequency in days for warm_start capability
 export ARCH_FCSTICFREQ=1     # Archive frequency in days for gdas and gfs forecast-only capability
 
+export DELETE_COM_IN_ARCHIVE_JOB="YES"   # NO=retain ROTDIR.  YES default in arch.sh and earc.sh.
+
 echo "END: config.base"

sorc/checkout.sh

@@ -59,7 +59,7 @@ if [[ ! -d gfs_post.fd ]] ; then
     rm -f ${topdir}/checkout-gfs_post.log
     git clone https://github.com/NOAA-EMC/EMC_post.git gfs_post.fd >> ${topdir}/checkout-gfs_post.log 2>&1
     cd gfs_post.fd
-    git checkout upp_gfsv16_release.v1.0.8
+    git checkout upp_gfsv16_release.v1.0.9
     cd ${topdir}
 else
     echo 'Skip.  Directory gfs_post.fd already exists.'