Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Dump bam stats #18

Merged
merged 4 commits into from
Aug 6, 2024
Merged

Dump bam stats #18

merged 4 commits into from
Aug 6, 2024

Conversation

jonas-fuchs
Copy link
Owner

Now stats from the title are dumped to a tabular file. Additionally coverage calculation bugs (min cov is not considered here anymore and a +1 bug) were fixed and annotation now more clearly describe how stats are calculated:

  • recovery: only the positions that are covered at least min-cov x are considered.
  • coverage: just the mean over the position range

@jonas-fuchs jonas-fuchs added bug Something isn't working enhancement New feature or request labels Aug 6, 2024
@jonas-fuchs jonas-fuchs linked an issue Aug 6, 2024 that may be closed by this pull request
@jonas-fuchs jonas-fuchs merged commit cb4d1f4 into master Aug 6, 2024
2 checks passed
@jonas-fuchs jonas-fuchs deleted the dump_stats branch August 6, 2024 11:07
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working enhancement New feature or request
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Summary statistics in text file
1 participant