getAssemblyInfo is missing a closing }

[cbird808]

getAssemblyInfo(){
#Have user estimate/enter assembly parameters if unentered

if [ -z "$CUTOFF" ]; then

	for i in {2..20};
	do 
	echo $i >> pfile
	done
	cat pfile | parallel -j $NUMProc --no-notice "echo -n {}xxx && mawk -v x={} '\$1 >= x' uniq.seqs | wc -l" | mawk  '{gsub("xxx","\t",$0); print;}'| $sort -g > uniqseq.data
	rm pfile


	#Plot graph of above data
	gnuplot << \EOF 
	set terminal dumb size 120, 30
	set autoscale
	set xrange [2:20] 
	unset label
	set title "Number of Unique Sequences with More than X Coverage (Counted within individuals)"
	set xlabel "Coverage"
	set ylabel "Number of Unique Sequences"
	set lmargin 10
	plot 'uniqseq.data' with lines notitle
	pause -1
EOF


	echo -en "\007"
	echo -en "\007"
	echo -en "\007"
	echo -e "Please choose data cutoff.  In essence, you are picking a minimum (within individual) coverage level for a read (allele) to be used in the reference assembly"
	
	read CUTOFF
fi

[jpuritz]

I believe it is here: Line 871

The indentations are off which is why this looks like it's missing. I fixed the indentations to make the code more readable.