DESCRIPTION

Package: seqsetvis
Type: Package
Title: Set Based Visualizations for Next-Gen Sequencing Data
Version: 1.25.5
Authors@R: person("Joseph R", "Boyd", email = "jrboyd@uvm.edu",
                  role = c("aut", "cre"), comment = c(ORCID="0000-0002-8969-9676"))
Description: seqsetvis enables the visualization and analysis of sets of 
    genomic sites in next gen sequencing data. 
    Although seqsetvis was designed for the comparison of 
    mulitple ChIP-seq samples, this package is domain-agnostic and allows the 
    processing of multiple genomic coordinate files (bed-like files) and 
    signal files (bigwig files pileups from bam file). seqsetvis has multiple
    functions for fetching data from regions into a tidy format for analysis in 
    data.table or tidyverse and visualization via ggplot2.
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: 
    BiocFileCache,
    BiocManager,
    BiocStyle,
    ChIPpeakAnno,
    covr, 
    knitr, 
    rmarkdown, 
    testthat
Depends: R (>= 4.3), ggplot2
Imports: 
    cowplot, 
    data.table, 
    eulerr, 
    GenomeInfoDb,
    GenomicAlignments,
    GenomicRanges, 
    ggplotify,
    grDevices, 
    grid, 
    IRanges, 
    limma,
    methods, 
    pbapply,
    pbmcapply,
    png, 
    RColorBrewer, 
    Rsamtools,
    rtracklayer, 
    S4Vectors, 
    scales,
    stats,
    UpSetR
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-01-08 17:54:19 UTC; joeboyd
biocViews: Software, ChIPSeq, MultipleComparison, Sequencing, Visualization