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Annotation of copy-number-regulated genes #10
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Adds Kandoth, Lawrence and Cancer Gene Census annotations to the vcf files. Changes hap_insuf postfix rule to one gene_ann postfix rule that adds all annotations at once.
Actually that commit added gene annotations but not the copy number regulated genes annotations |
That still needs to be done. Problem was that it can add a lot of columns, since the annotation is per subtype so we need some way of choosing what annotations to add. Maybe as a parameter to the Makefile |
how sparse is the matrix per subtype? Maybe we could collapse it into a single annotation column |
i.e., a single column that lists the number of subtypes where a gene is copy-number regulated |
I guess that could work as well |
Fix #10 Add copy number regulated annotation
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