[BUG]: Smashed parcellation applied to both marker and gene expression data

[LeSasse]

Is there an existing issue for this?

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Current Behavior

The parcellation is smashed, and the smashed parcellation is applied to both marker and gene expression data in the surrogate analysis for empirical p-value calculation.

Expected Behavior

The smashed parcellation should only be applied to the marker, not the gene expression data, which should use the real parcellation.

Steps To Reproduce

Run the pipeline.

Relevant log output

No response

Anything else?

No response