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RCC drift correction fails when installing via Python #24
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Hey! Just to let you know the problem is solved. I launched Render directly from the Anaconda terminal instead of double-clicking the shortcut (python -m picasso render). RCC drift correction now works. If any of the other users have this issue, launching directly from command line should solve it. |
Hi, |
Hey, Yes, but thanks for the reply anyway! I will for sure. |
Hey
I had a version of your software provided by your group to our PI (Gregory Giannone) which I've been using so far with no issues. Recently I've decided to re-install it via Python to have access to other routines such as the .csv exporter in the Render file. However, after this, RCC drift correction stopped working. Before that I never had any issues. Now, when using the same .hdf5 file with our standard version or the Python-installed one, the latter always gives me an error message when performing RCC: "RCC failed. Consider changing segmentation and make sure there are enough locs per frame"
It's not dependent on segmentation as I have increased it up to 100000 and still get the same error message. Any idea why this might be happening? I updated the tqdm package using anaconda, but no changes. Below you can see a comparison of both cases, with RCC working in the standard version and the error message for the Python version.
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