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Error in draw.bubblePlot(if set driver_number > 15) #3

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xuyang87 opened this issue May 31, 2020 · 1 comment
Open

Error in draw.bubblePlot(if set driver_number > 15) #3

xuyang87 opened this issue May 31, 2020 · 1 comment

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@xuyang87
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draw.bubblePlot(driver_list= driver_list,show_label=ms_tab[driver_list,'gene_label'],
Z_val=ms_tab[driver_list,sprintf('Z.%s_DA',comp_name)],
driver_type=ms_tab[driver_list,'gene_biotype'],
target_list=analysis.par$merge.network$target_list,transfer2symbol2type=transfer_tab,
bg_list=ms_tab[,'geneSymbol'],min_gs_size=5,max_gs_size=500,use_gs="all",
top_geneset_number=15,top_driver_number=20,
pdf_file = sprintf('%s/bubblePlot2.pdf',analysis.par$out.dir.PLOT),
main='Bubbleplot for top driver targets')

“Error in xy.coords(x, y) : 'x' and 'y' lengths differ”

when I set up draw.bubblePlot>15, draw.bubblePlot will results in an error that show “Error in xy.coords(x, y) : 'x' and 'y' lengths differ”

@SherryDong
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I guess one of the results from driver_list may not have target enrichment result, could you narrow down the driver_list to find out the one with the error message ?

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