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[Bug]: Issue updating Eureka with conda? #389

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2 tasks done
Witchblade101 opened this issue Jul 15, 2022 · 8 comments · Fixed by #686
Closed
2 tasks done

[Bug]: Issue updating Eureka with conda? #389

Witchblade101 opened this issue Jul 15, 2022 · 8 comments · Fixed by #686
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@AarynnCarter
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bug Something isn't working NIRSpec

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@Witchblade101
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Witchblade101 commented Jul 15, 2022 •
edited by taylorbell57
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FAQ check

  • Yes, I checked the FAQ and my question has not been addressed.

Instrument

NIRSpec (Stages 1-3)

What happened?

Stage 1 runs, but produces no output. It appears that it reads the value of 'CALCULATED_TRACK_TR_202111' for the pointing quality from the data, but that's not in the dict.

Error traceback output

(eureka) minmei:TRAPPIST-1c-Eureka dlong$ python run_eureka.py

Starting Stage 1 Processing
Input directory: /Users/dlong/Data/02420/
Output directory: /Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/
Copying S1 control file

Found 8 data file(s) ending in uncal.fits
Starting file 1 of 8: jw02420001001_02101_00001-seg001_nrs1_uncal.fits
2022-07-15 09:33:46,142 - stpipe.EurekaS1Pipeline - INFO - EurekaS1Pipeline instance created.
2022-07-15 09:33:46,143 - stpipe.EurekaS1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2022-07-15 09:33:46,144 - stpipe.EurekaS1Pipeline.dq_init - INFO - DQInitStep instance created.
2022-07-15 09:33:46,144 - stpipe.EurekaS1Pipeline.saturation - INFO - SaturationStep instance created.
2022-07-15 09:33:46,145 - stpipe.EurekaS1Pipeline.ipc - INFO - IPCStep instance created.
2022-07-15 09:33:46,146 - stpipe.EurekaS1Pipeline.superbias - INFO - SuperBiasStep instance created.
2022-07-15 09:33:46,147 - stpipe.EurekaS1Pipeline.refpix - INFO - RefPixStep instance created.
2022-07-15 09:33:46,148 - stpipe.EurekaS1Pipeline.rscd - INFO - RscdStep instance created.
2022-07-15 09:33:46,149 - stpipe.EurekaS1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2022-07-15 09:33:46,150 - stpipe.EurekaS1Pipeline.lastframe - INFO - LastFrameStep instance created.
2022-07-15 09:33:46,151 - stpipe.EurekaS1Pipeline.linearity - INFO - LinearityStep instance created.
2022-07-15 09:33:46,152 - stpipe.EurekaS1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2022-07-15 09:33:46,153 - stpipe.EurekaS1Pipeline.reset - INFO - ResetStep instance created.
2022-07-15 09:33:46,154 - stpipe.EurekaS1Pipeline.persistence - INFO - PersistenceStep instance created.
2022-07-15 09:33:46,156 - stpipe.EurekaS1Pipeline.jump - INFO - JumpStep instance created.
2022-07-15 09:33:46,157 - stpipe.EurekaS1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2022-07-15 09:33:46,159 - stpipe.EurekaS1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2022-07-15 09:33:46,163 - stpipe.Eureka_RampFitStep - INFO - Eureka_RampFitStep instance created.
2022-07-15 09:33:46,233 - stpipe.EurekaS1Pipeline - INFO - Step EurekaS1Pipeline running with args ('/Users/dlong/Data/02420/jw02420001001_02101_00001-seg001_nrs1_uncal.fits',).
2022-07-15 09:33:46,249 - stpipe.EurekaS1Pipeline - INFO - Step EurekaS1Pipeline parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': True, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'save_calibrated_ramp': False, 'steps': {'group_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dq_init': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'saturation': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'ipc': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'superbias': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'refpix': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}, 'rscd': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'type': 'baseline'}, 'firstframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'lastframe': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'linearity': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'dark_current': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'dark_output': None}, 'reset': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}, 'persistence': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'input_trapsfilled': '', 'flag_pers_cutoff': 40.0, 'save_persistence': False, 'save_trapsfilled': True}, 'jump': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}, 'ramp_fit': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'all'}, 'gain_scale': {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': ''}}}
2022-07-15 09:33:47,355 - stpipe.EurekaS1Pipeline - WARNING - /Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating meta.visit.engdb_pointing_quality the following error occurred:
'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']

Failed validating 'enum' in schema:
    OrderedDict([('title', 'Quality of pointing information from EngDB'),
                 ('type', 'string'),
                 ('enum',
                  ['CALCULATED',
                   'CALCULATED_COARSE_TR_202107',
                   'CALCULATED_FULL',
                   'CALCULATED_FULLVA',
                   'CALCULATED_GSCMD',
                   'CALCULATED_GSCMD_V3PAGS',
                   'CALCULATED_ORIGINAL',
                   'PLANNED',
                   'CALCULATED_TR_202105',
                   'CALCULATED_TR_202105_VA',
                   'CALCULATED_TRACK_TR_202107']),
                 ('fits_keyword', 'ENGQLPTG'),
                 ('blend_table', True)])

On instance:
    'CALCULATED_TRACK_TR_202111'
  warnings.warn(errmsg, ValidationWarning)

2022-07-15 09:33:47,504 - stpipe.EurekaS1Pipeline - INFO - Prefetching reference files for dataset: 'jw02420001001_02101_00001-seg001_nrs1_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'superbias']
2022-07-15 09:33:49,023 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_wavelengthrange_0019.rmap    1.4 K bytes  (1 / 43 files) (0 / 197.1 K bytes)
2022-07-15 09:33:49,115 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ote_0022.rmap    1.3 K bytes  (2 / 43 files) (1.4 K / 197.1 K bytes)
2022-07-15 09:33:49,203 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_msaoper_0006.rmap    1.0 K bytes  (3 / 43 files) (2.7 K / 197.1 K bytes)
2022-07-15 09:33:49,283 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_msa_0020.rmap    1.3 K bytes  (4 / 43 files) (3.7 K / 197.1 K bytes)
2022-07-15 09:33:49,372 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ifuslicer_0011.rmap    1.4 K bytes  (5 / 43 files) (5.0 K / 197.1 K bytes)
2022-07-15 09:33:49,459 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ifupost_0013.rmap    1.4 K bytes  (6 / 43 files) (6.4 K / 197.1 K bytes)
2022-07-15 09:33:49,548 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_ifufore_0011.rmap    1.4 K bytes  (7 / 43 files) (7.8 K / 197.1 K bytes)
2022-07-15 09:33:49,638 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_fpa_0021.rmap    1.3 K bytes  (8 / 43 files) (9.1 K / 197.1 K bytes)
2022-07-15 09:33:49,726 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_fore_0019.rmap    5.1 K bytes  (9 / 43 files) (10.4 K / 197.1 K bytes)
2022-07-15 09:33:49,810 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_disperser_0021.rmap    6.0 K bytes  (10 / 43 files) (15.5 K / 197.1 K bytes)
2022-07-15 09:33:49,897 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_dark_0041.rmap   24.9 K bytes  (11 / 43 files) (21.6 K / 197.1 K bytes)
2022-07-15 09:33:50,008 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_collimator_0019.rmap    1.4 K bytes  (12 / 43 files) (46.5 K / 197.1 K bytes)
2022-07-15 09:33:50,091 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_camera_0019.rmap    1.3 K bytes  (13 / 43 files) (47.9 K / 197.1 K bytes)
2022-07-15 09:33:50,176 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nirspec_0261.imap    5.1 K bytes  (14 / 43 files) (49.2 K / 197.1 K bytes)
2022-07-15 09:33:50,261 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_wfssbkg_0007.rmap    3.1 K bytes  (15 / 43 files) (54.3 K / 197.1 K bytes)
2022-07-15 09:33:50,346 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_wavemap_0008.rmap    2.2 K bytes  (16 / 43 files) (57.4 K / 197.1 K bytes)
2022-07-15 09:33:50,423 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_spectrace_0008.rmap    2.3 K bytes  (17 / 43 files) (59.6 K / 197.1 K bytes)
2022-07-15 09:33:50,507 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_specprofile_0008.rmap    2.4 K bytes  (18 / 43 files) (62.0 K / 197.1 K bytes)
2022-07-15 09:33:50,594 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_photom_0028.rmap    1.2 K bytes  (19 / 43 files) (64.3 K / 197.1 K bytes)
2022-07-15 09:33:50,676 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_pars-tweakregstep_0005.rmap    3.1 K bytes  (20 / 43 files) (65.6 K / 197.1 K bytes)
2022-07-15 09:33:50,769 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_dark_0031.rmap    6.8 K bytes  (21 / 43 files) (68.7 K / 197.1 K bytes)
2022-07-15 09:33:50,854 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_niriss_0190.imap    5.1 K bytes  (22 / 43 files) (75.5 K / 197.1 K bytes)
2022-07-15 09:33:50,955 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_superbias_0008.rmap    8.9 K bytes  (23 / 43 files) (80.6 K / 197.1 K bytes)
2022-07-15 09:33:51,044 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_readnoise_0014.rmap   17.2 K bytes  (24 / 43 files) (89.5 K / 197.1 K bytes)
2022-07-15 09:33:51,154 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_filteroffset_0004.rmap    1.4 K bytes  (25 / 43 files) (106.7 K / 197.1 K bytes)
2022-07-15 09:33:51,240 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_distortion_0028.rmap   22.6 K bytes  (26 / 43 files) (108.1 K / 197.1 K bytes)
2022-07-15 09:33:51,340 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_nircam_0214.imap    5.0 K bytes  (27 / 43 files) (130.8 K / 197.1 K bytes)
2022-07-15 09:33:51,432 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_specwcs_0031.rmap    5.5 K bytes  (28 / 43 files) (135.8 K / 197.1 K bytes)
2022-07-15 09:33:51,518 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_reset_0022.rmap    4.2 K bytes  (29 / 43 files) (141.3 K / 197.1 K bytes)
2022-07-15 09:33:51,601 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_photom_0036.rmap    3.9 K bytes  (30 / 43 files) (145.5 K / 197.1 K bytes)
2022-07-15 09:33:51,694 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-spec3pipeline_0003.rmap      816 bytes  (31 / 43 files) (149.4 K / 197.1 K bytes)
2022-07-15 09:33:51,779 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-spec2pipeline_0007.rmap    1.1 K bytes  (32 / 43 files) (150.2 K / 197.1 K bytes)
2022-07-15 09:33:51,864 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-outlierdetectionstep_0012.rmap    3.4 K bytes  (33 / 43 files) (151.3 K / 197.1 K bytes)
2022-07-15 09:33:51,951 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_pars-detector1pipeline_0004.rmap    1.1 K bytes  (34 / 43 files) (154.7 K / 197.1 K bytes)
2022-07-15 09:33:52,037 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_flat_0059.rmap   15.4 K bytes  (35 / 43 files) (155.8 K / 197.1 K bytes)
2022-07-15 09:33:52,136 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_extract1d_0017.rmap    1.3 K bytes  (36 / 43 files) (171.2 K / 197.1 K bytes)
2022-07-15 09:33:52,220 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_dark_0026.rmap    5.1 K bytes  (37 / 43 files) (172.5 K / 197.1 K bytes)
2022-07-15 09:33:52,307 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_cubepar_0012.rmap      800 bytes  (38 / 43 files) (177.5 K / 197.1 K bytes)
2022-07-15 09:33:52,389 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_apcorr_0009.rmap    4.3 K bytes  (39 / 43 files) (178.3 K / 197.1 K bytes)
2022-07-15 09:33:52,476 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_miri_0301.imap    5.2 K bytes  (40 / 43 files) (182.6 K / 197.1 K bytes)
2022-07-15 09:33:52,560 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_fgs_apcorr_0003.rmap    4.1 K bytes  (41 / 43 files) (187.8 K / 197.1 K bytes)
2022-07-15 09:33:52,642 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_fgs_0103.imap    4.6 K bytes  (42 / 43 files) (191.9 K / 197.1 K bytes)
2022-07-15 09:33:52,732 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/mappings/jwst/jwst_0927.pmap         580 bytes  (43 / 43 files) (196.5 K / 197.1 K bytes)
2022-07-15 09:33:53,492 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0048.fits  135.4 K bytes  (1 / 7 files) (0 / 44.6 M bytes)
2022-07-15 09:33:53,691 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits    2.1 M bytes  (2 / 7 files) (135.4 K / 44.6 M bytes)
2022-07-15 09:33:54,324 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits   14.9 M bytes  (3 / 7 files) (2.2 M / 44.6 M bytes)
2022-07-15 09:33:55,900 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0029.fits   16.8 M bytes  (4 / 7 files) (17.2 M / 44.6 M bytes)
2022-07-15 09:33:57,317 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits    4.2 M bytes  (5 / 7 files) (34.0 M / 44.6 M bytes)
2022-07-15 09:33:57,926 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0024.fits    6.4 M bytes  (6 / 7 files) (38.2 M / 44.6 M bytes)
2022-07-15 09:33:59,031 - CRDS - INFO -  Fetching  /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0071.fits   54.7 K bytes  (7 / 7 files) (44.6 M / 44.6 M bytes)
2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for DARK reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0048.fits'.
2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for GAIN reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits'.
2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for LINEARITY reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits'.
2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for MASK reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0029.fits'.
2022-07-15 09:33:59,174 - stpipe.EurekaS1Pipeline - INFO - Prefetch for READNOISE reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits'.
2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for SATURATION reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0024.fits'.
2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0071.fits'.
2022-07-15 09:33:59,175 - stpipe.EurekaS1Pipeline - INFO - Starting calwebb_detector1 ...
2022-07-15 09:33:59,604 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:33:59,605 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:33:59,668 - stpipe.EurekaS1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2022-07-15 09:33:59,668 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step will be skipped
2022-07-15 09:33:59,670 - stpipe.EurekaS1Pipeline.group_scale - INFO - Step group_scale done
2022-07-15 09:33:59,755 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:33:59,756 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:33:59,793 - stpipe.EurekaS1Pipeline.dq_init - INFO - Using MASK reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_mask_0029.fits
2022-07-15 09:34:00,015 - stpipe.EurekaS1Pipeline.dq_init - INFO - Extracting mask subarray to match science data
2022-07-15 09:34:00,028 - stpipe.EurekaS1Pipeline.dq_init - INFO - Step dq_init done
2022-07-15 09:34:00,128 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:00,129 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:00,168 - stpipe.EurekaS1Pipeline.saturation - INFO - Using SATURATION reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_saturation_0024.fits
2022-07-15 09:34:00,258 - stpipe.EurekaS1Pipeline.saturation - INFO - Extracting reference file subarray to match science data
2022-07-15 09:34:00,268 - stpipe.EurekaS1Pipeline.saturation - INFO - Detected 0 saturated pixels
2022-07-15 09:34:00,268 - stpipe.EurekaS1Pipeline.saturation - INFO - Detected 0 A/D floor pixels
2022-07-15 09:34:00,274 - stpipe.EurekaS1Pipeline.saturation - INFO - Step saturation done
2022-07-15 09:34:00,362 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:00,363 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': True, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:00,363 - stpipe.EurekaS1Pipeline.ipc - INFO - Step skipped.
2022-07-15 09:34:00,366 - stpipe.EurekaS1Pipeline.ipc - INFO - Step ipc done
2022-07-15 09:34:00,455 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:00,457 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:00,495 - stpipe.EurekaS1Pipeline.superbias - INFO - Using SUPERBIAS reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_superbias_0071.fits
2022-07-15 09:34:00,615 - stpipe.EurekaS1Pipeline.superbias - INFO - Step superbias done
2022-07-15 09:34:00,707 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:00,708 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420', 'odd_even_columns': True, 'use_side_ref_pixels': True, 'side_smoothing_length': 11, 'side_gain': 1.0, 'odd_even_rows': True}
2022-07-15 09:34:00,726 - stpipe.EurekaS1Pipeline.refpix - INFO - use_side_ref_pixels = True
2022-07-15 09:34:00,726 - stpipe.EurekaS1Pipeline.refpix - INFO - odd_even_columns = True
2022-07-15 09:34:00,727 - stpipe.EurekaS1Pipeline.refpix - INFO - side_smoothing_length = 11
2022-07-15 09:34:00,727 - stpipe.EurekaS1Pipeline.refpix - INFO - side_gain = 1.000000
2022-07-15 09:34:00,727 - stpipe.EurekaS1Pipeline.refpix - INFO - odd_even_rows = True
2022-07-15 09:34:00,815 - stpipe.EurekaS1Pipeline.refpix - INFO - Step refpix done
2022-07-15 09:34:00,914 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:00,915 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:00,954 - stpipe.EurekaS1Pipeline.linearity - INFO - Using Linearity reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_linearity_0024.fits
2022-07-15 09:34:01,011 - stpipe.EurekaS1Pipeline.linearity - WARNING - Keyword BAD_LIN_CORR does not correspond to an existing DQ mnemonic, so will be ignored
2022-07-15 09:34:01,050 - stpipe.EurekaS1Pipeline.linearity - INFO - Extracting linearity subarray to match science data
2022-07-15 09:34:01,076 - stpipe.EurekaS1Pipeline.linearity - INFO - Step linearity done
2022-07-15 09:34:01,170 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:01,171 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420', 'dark_output': None}
2022-07-15 09:34:01,209 - stpipe.EurekaS1Pipeline.dark_current - INFO - Using DARK reference file /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_dark_0048.fits
2022-07-15 09:34:01,269 - stpipe.EurekaS1Pipeline.dark_current - INFO - Science data nints=1, ngroups=3, nframes=1, groupgap=0
2022-07-15 09:34:01,269 - stpipe.EurekaS1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=12, nframes=1, groupgap=0
2022-07-15 09:34:01,307 - stpipe.EurekaS1Pipeline.dark_current - INFO - Step dark_current done
2022-07-15 09:34:01,392 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:01,394 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420', 'rejection_threshold': 4.0, 'three_group_rejection_threshold': 6.0, 'four_group_rejection_threshold': 5.0, 'maximum_cores': 'none', 'flag_4_neighbors': True, 'max_jump_to_flag_neighbors': 1000.0, 'min_jump_to_flag_neighbors': 10.0}
2022-07-15 09:34:01,411 - stpipe.EurekaS1Pipeline.jump - INFO - CR rejection threshold = 4 sigma
2022-07-15 09:34:01,431 - stpipe.EurekaS1Pipeline.jump - INFO - Using GAIN reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits
2022-07-15 09:34:01,483 - stpipe.EurekaS1Pipeline.jump - INFO - Using READNOISE reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits
2022-07-15 09:34:01,519 - stpipe.EurekaS1Pipeline.jump - INFO - Using 1 core for jump detection
2022-07-15 09:34:01,555 - stpipe.EurekaS1Pipeline.jump - INFO - Extracting gain subarray to match science data
2022-07-15 09:34:01,555 - stpipe.EurekaS1Pipeline.jump - INFO - Extracting readnoise subarray to match science data
2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - Executing two-point difference method
2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - Working on integration 1:
2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - From highest outlier Two-point found 0 pixels with at least one CR and at least four groups
2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - From highest outlier Two-point found 0 pixels with at least one CR and three groups
2022-07-15 09:34:01,556 - stpipe.EurekaS1Pipeline.jump - INFO - From highest outlier Two-point found 1013 pixels with at least one CR and two groups
2022-07-15 09:34:01,572 - stpipe.EurekaS1Pipeline.jump - INFO - Total elapsed time = 0.0163109 sec
2022-07-15 09:34:01,574 - stpipe.EurekaS1Pipeline.jump - INFO - The execution time in seconds: 0.163392
2022-07-15 09:34:01,579 - stpipe.EurekaS1Pipeline.jump - INFO - Step jump done
2022-07-15 09:34:01,665 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep running with args (<RampModel(1, 3, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:01,666 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': '/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/S1_2022-07-15_trappist1c_run1/', 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': None, 'search_output_file': True, 'input_dir': '', 'int_name': '', 'save_opt': False, 'opt_name': '', 'maximum_cores': 'all'}
2022-07-15 09:34:01,721 - stpipe.Eureka_RampFitStep - INFO - Using READNOISE reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_readnoise_0036.fits
2022-07-15 09:34:01,721 - stpipe.Eureka_RampFitStep - INFO - Using GAIN reference file: /Users/dlong/crds_cache/references/jwst/nirspec/jwst_nirspec_gain_0021.fits
2022-07-15 09:34:01,783 - stpipe.Eureka_RampFitStep - INFO - Extracting gain subarray to match science data
2022-07-15 09:34:01,783 - stpipe.Eureka_RampFitStep - INFO - Extracting readnoise subarray to match science data
2022-07-15 09:34:01,784 - stpipe.Eureka_RampFitStep - INFO - Using algorithm = default
2022-07-15 09:34:01,784 - stpipe.Eureka_RampFitStep - INFO - Using weighting = default
2022-07-15 09:34:01,787 - stpipe.Eureka_RampFitStep - INFO - Number of processors used for multiprocessing: 16
2022-07-15 09:34:08,364 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,364 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,364 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,364 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,364 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,364 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,365 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,365 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,365 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,365 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,366 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,366 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,367 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,367 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,367 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,367 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,367 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,368 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,368 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,368 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,369 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,369 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,369 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,369 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:08,369 - stpipe - INFO - Number of groups per integration: 3
2022-07-15 09:34:08,369 - stpipe - INFO - Number of integrations: 1
2022-07-15 09:34:10,161 - stpipe.Eureka_RampFitStep - WARNING - /Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating <ImageModel(32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits> the following error occurred:
'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']

Failed validating 'enum' in schema['properties']['meta']['properties']['visit']['properties']['engdb_pointing_quality']:
    OrderedDict([('title', 'Quality of pointing information from EngDB'),
                 ('type', 'string'),
                 ('enum',
                  ['CALCULATED',
                   'CALCULATED_COARSE_TR_202107',
                   'CALCULATED_FULL',
                   'CALCULATED_FULLVA',
                   'CALCULATED_GSCMD',
                   'CALCULATED_GSCMD_V3PAGS',
                   'CALCULATED_ORIGINAL',
                   'PLANNED',
                   'CALCULATED_TR_202105',
                   'CALCULATED_TR_202105_VA',
                   'CALCULATED_TRACK_TR_202107']),
                 ('fits_keyword', 'ENGQLPTG'),
                 ('blend_table', True)])

On instance['meta']['visit']['engdb_pointing_quality']:
    'CALCULATED_TRACK_TR_202111'
  warnings.warn(errmsg, ValidationWarning)

2022-07-15 09:34:10,203 - stpipe.Eureka_RampFitStep - WARNING - /Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/validate.py:34: ValidationWarning: While validating <CubeModel(1, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits> the following error occurred:
'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']

Failed validating 'enum' in schema['properties']['meta']['properties']['visit']['properties']['engdb_pointing_quality']:
    OrderedDict([('title', 'Quality of pointing information from EngDB'),
                 ('type', 'string'),
                 ('enum',
                  ['CALCULATED',
                   'CALCULATED_COARSE_TR_202107',
                   'CALCULATED_FULL',
                   'CALCULATED_FULLVA',
                   'CALCULATED_GSCMD',
                   'CALCULATED_GSCMD_V3PAGS',
                   'CALCULATED_ORIGINAL',
                   'PLANNED',
                   'CALCULATED_TR_202105',
                   'CALCULATED_TR_202105_VA',
                   'CALCULATED_TRACK_TR_202107']),
                 ('fits_keyword', 'ENGQLPTG'),
                 ('blend_table', True)])

On instance['meta']['visit']['engdb_pointing_quality']:
    'CALCULATED_TRACK_TR_202111'
  warnings.warn(errmsg, ValidationWarning)

2022-07-15 09:34:10,218 - stpipe.Eureka_RampFitStep - INFO - Step Eureka_RampFitStep done
2022-07-15 09:34:10,325 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:10,326 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scale', 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:10,366 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Rescaling by 1.95
2022-07-15 09:34:10,374 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale done
2022-07-15 09:34:10,459 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 32, 32) from jw02420001001_02101_00001-seg001_nrs1_uncal.fits>,).
2022-07-15 09:34:10,460 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale parameters are: {'pre_hooks': [], 'post_hooks': [], 'output_file': None, 'output_dir': None, 'output_ext': '.fits', 'output_use_model': False, 'output_use_index': True, 'save_results': False, 'skip': False, 'suffix': 'gain_scaleints', 'search_output_file': True, 'input_dir': '/Users/dlong/Data/02420'}
2022-07-15 09:34:10,507 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Rescaling by 1.95
2022-07-15 09:34:10,515 - stpipe.EurekaS1Pipeline.gain_scale - INFO - Step gain_scale done
Traceback (most recent call last):
  File "/Users/dlong/DataAnalysis/JWST/TRAPPIST-1c-Eureka/run_eureka.py", line 22, in <module>
    s1_meta = s1.rampfitJWST(eventlabel, ecf_path=ecf_path)
  File "/Users/dlong/Eureka/src/eureka/S1_detector_processing/s1_process.py", line 98, in rampfitJWST
    EurekaS1Pipeline().run_eurekaS1(filename, meta, log)
  File "/Users/dlong/Eureka/src/eureka/S1_detector_processing/s1_process.py", line 204, in run_eurekaS1
    self(filename)
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stpipe/step.py", line 430, in run
    step_result = self.process(*args)
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/jwst/pipeline/calwebb_detector1.py", line 146, in process
    self.save_model(ints_model, 'rateints')
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stpipe/step.py", line 938, in save_model
    output_path = model.save(
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/model_base.py", line 512, in save
    self.to_fits(output_path, *args, **kwargs)
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/model_base.py", line 624, in to_fits
    hdulist, tree = fits_support.to_fits(self._instance, self._schema)
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/fits_support.py", line 416, in to_fits
    _save_from_schema(hdulist, tree, schema)
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/stdatamodels/fits_support.py", line 352, in _save_from_schema
    validator.validate(tree, _schema=schema)
  File "/Users/dlong/miniconda3/envs/eureka/lib/python3.9/site-packages/jsonschema/validators.py", line 353, in validate
    raise error
jsonschema.exceptions.ValidationError: 'CALCULATED_TRACK_TR_202111' is not one of ['CALCULATED', 'CALCULATED_COARSE_TR_202107', 'CALCULATED_FULL', 'CALCULATED_FULLVA', 'CALCULATED_GSCMD', 'CALCULATED_GSCMD_V3PAGS', 'CALCULATED_ORIGINAL', 'PLANNED', 'CALCULATED_TR_202105', 'CALCULATED_TR_202105_VA', 'CALCULATED_TRACK_TR_202107']

Failed validating 'enum' in schema['properties']['meta']['properties']['visit']['properties']['engdb_pointing_quality']:
    OrderedDict([('title', 'Quality of pointing information from EngDB'),
                 ('type', 'string'),
                 ('enum',
                  ['CALCULATED',
                   'CALCULATED_COARSE_TR_202107',
                   'CALCULATED_FULL',
                   'CALCULATED_FULLVA',
                   'CALCULATED_GSCMD',
                   'CALCULATED_GSCMD_V3PAGS',
                   'CALCULATED_ORIGINAL',
                   'PLANNED',
                   'CALCULATED_TR_202105',
                   'CALCULATED_TR_202105_VA',
                   'CALCULATED_TRACK_TR_202107']),
                 ('fits_keyword', 'ENGQLPTG'),
                 ('blend_table', True)])

On instance['meta']['visit']['engdb_pointing_quality']:
    'CALCULATED_TRACK_TR_202111'
(eureka) minmei:TRAPPIST-1c-Eureka dlong$ /Users/dlong/miniconda3/envs/eureka/lib/python3.9/multiprocessing/resource_tracker.py:216: UserWarning: resource_tracker: There appear to be 32 leaked semaphore objects to clean up at shutdown
  warnings.warn('resource_tracker: There appear to be %d '

What operating system are you using?

MacOS Catalina 10.15.7

What version of Python are you running?

Python 3.9.7

What Python packages do you have installed?

# packages in environment at /Users/dlong/miniconda3/envs/eureka:
#
# Name                    Version                   Build  Channel
alabaster                 0.7.12                   pypi_0    pypi
appnope                   0.1.3                    pypi_0    pypi
asdf                      2.10.1                   pypi_0    pypi
asdf-astropy              0.2.1                    pypi_0    pypi
asdf-coordinates-schemas  0.1.0                    pypi_0    pypi
asdf-standard             1.0.2                    pypi_0    pypi
asdf-transform-schemas    0.2.2                    pypi_0    pypi
asdf-wcs-schemas          0.1.1                    pypi_0    pypi
asteval                   0.9.27                   pypi_0    pypi
astraeus                  0.2                      pypi_0    pypi
astropy                   5.1                      pypi_0    pypi
astropy-healpix           0.6                      pypi_0    pypi
astroquery                0.4.6                    pypi_0    pypi
astroscrappy              1.1.0                    pypi_0    pypi
asttokens                 2.0.5                    pypi_0    pypi
attrs                     21.4.0                   pypi_0    pypi
babel                     2.10.3                   pypi_0    pypi
backcall                  0.2.0                    pypi_0    pypi
batman-package            2.4.9                    pypi_0    pypi
beautifulsoup4            4.11.1                   pypi_0    pypi
bokeh                     2.4.3                    pypi_0    pypi
bottleneck                1.3.4                    pypi_0    pypi
ca-certificates           2022.4.26            hecd8cb5_0
ccdproc                   2.3.1                    pypi_0    pypi
celerite                  0.4.2                    pypi_0    pypi
certifi                   2022.6.15        py39hecd8cb5_0
cftime                    1.6.1                    pypi_0    pypi
charset-normalizer        2.1.0                    pypi_0    pypi
cloudpickle               2.1.0                    pypi_0    pypi
corner                    2.2.1                    pypi_0    pypi
crds                      11.16.5                  pypi_0    pypi
cycler                    0.11.0                   pypi_0    pypi
cython                    0.29.30                  pypi_0    pypi
dask                      2022.6.0                 pypi_0    pypi
decorator                 5.1.1                    pypi_0    pypi
docutils                  0.18.1                   pypi_0    pypi
drizzle                   1.13.4                   pypi_0    pypi
dynesty                   1.2.3                    pypi_0    pypi
emcee                     3.1.2                    pypi_0    pypi
eureka                    0.2                       dev_0    <develop>
executing                 0.8.3                    pypi_0    pypi
exotic-ld                 2.0.0                    pypi_0    pypi
filelock                  3.7.1                    pypi_0    pypi
fonttools                 4.33.3                   pypi_0    pypi
fsspec                    2022.5.0                 pypi_0    pypi
future                    0.18.2                   pypi_0    pypi
george                    0.4.0                    pypi_0    pypi
gwcs                      0.18.1                   pypi_0    pypi
h5netcdf                  1.0.1                    pypi_0    pypi
h5py                      3.1.0                    pypi_0    pypi
html5lib                  1.1                      pypi_0    pypi
idna                      3.3                      pypi_0    pypi
imageio                   2.19.3                   pypi_0    pypi
imagesize                 1.3.0                    pypi_0    pypi
importlib-metadata        4.12.0                   pypi_0    pypi
iniconfig                 1.1.1                    pypi_0    pypi
ipython                   8.4.0                    pypi_0    pypi
jedi                      0.18.1                   pypi_0    pypi
jinja2                    3.1.2                    pypi_0    pypi
jmespath                  1.0.1                    pypi_0    pypi
jsonschema                3.2.0                    pypi_0    pypi
jwst                      1.3.3                    pypi_0    pypi
keyring                   23.6.0                   pypi_0    pypi
kiwisolver                1.4.3                    pypi_0    pypi
libcxx                    12.0.0               h2f01273_0
libffi                    3.3                  hb1e8313_2
lmfit                     1.0.3                    pypi_0    pypi
locket                    1.0.0                    pypi_0    pypi
lxml                      4.9.0                    pypi_0    pypi
markupsafe                2.1.1                    pypi_0    pypi
matplotlib                3.5.2                    pypi_0    pypi
matplotlib-inline         0.1.3                    pypi_0    pypi
ncurses                   6.3                  hca72f7f_2
netcdf4                   1.6.0                    pypi_0    pypi
networkx                  2.8.4                    pypi_0    pypi
numpy                     1.23.0                   pypi_0    pypi
numpydoc                  1.4.0                    pypi_0    pypi
openssl                   1.1.1p               hca72f7f_0
packaging                 21.3                     pypi_0    pypi
pandas                    1.4.3                    pypi_0    pypi
parsley                   1.3                      pypi_0    pypi
parso                     0.8.3                    pypi_0    pypi
partd                     1.2.0                    pypi_0    pypi
pexpect                   4.8.0                    pypi_0    pypi
photutils                 1.1.0                    pypi_0    pypi
pickleshare               0.7.5                    pypi_0    pypi
pillow                    9.1.1                    pypi_0    pypi
pip                       21.2.4           py39hecd8cb5_0
pluggy                    1.0.0                    pypi_0    pypi
poppy                     1.0.3                    pypi_0    pypi
prompt-toolkit            3.0.30                   pypi_0    pypi
psutil                    5.9.1                    pypi_0    pypi
ptyprocess                0.7.0                    pypi_0    pypi
pure-eval                 0.2.2                    pypi_0    pypi
py                        1.11.0                   pypi_0    pypi
pyerfa                    2.0.0.1                  pypi_0    pypi
pygments                  2.12.0                   pypi_0    pypi
pyparsing                 3.0.9                    pypi_0    pypi
pyrsistent                0.18.1                   pypi_0    pypi
pysynphot                 2.0.0                    pypi_0    pypi
pytest                    7.1.2                    pypi_0    pypi
python                    3.9.7                h88f2d9e_1
python-dateutil           2.8.2                    pypi_0    pypi
pytz                      2022.1                   pypi_0    pypi
pyvo                      1.3                      pypi_0    pypi
pywavelets                1.3.0                    pypi_0    pypi
pyyaml                    6.0                      pypi_0    pypi
readline                  8.1.2                hca72f7f_1
reproject                 0.8                      pypi_0    pypi
requests                  2.28.1                   pypi_0    pypi
scikit-image              0.19.3                   pypi_0    pypi
scipy                     1.8.1                    pypi_0    pypi
semantic-version          2.10.0                   pypi_0    pypi
setuptools                61.2.0           py39hecd8cb5_0
six                       1.16.0                   pypi_0    pypi
snowballstemmer           2.2.0                    pypi_0    pypi
soupsieve                 2.3.2.post1              pypi_0    pypi
spherical-geometry        1.2.22                   pypi_0    pypi
sphinx                    5.0.2                    pypi_0    pypi
sphinxcontrib-applehelp   1.0.2                    pypi_0    pypi
sphinxcontrib-devhelp     1.0.2                    pypi_0    pypi
sphinxcontrib-htmlhelp    2.0.0                    pypi_0    pypi
sphinxcontrib-jsmath      1.0.1                    pypi_0    pypi
sphinxcontrib-qthelp      1.0.3                    pypi_0    pypi
sphinxcontrib-serializinghtml 1.1.5                    pypi_0    pypi
sqlite                    3.38.5               h707629a_0
stack-data                0.3.0                    pypi_0    pypi
stcal                     1.0.0                    pypi_0    pypi
stdatamodels              0.2.4                    pypi_0    pypi
stpipe                    0.3.3                    pypi_0    pypi
stsci-image               2.3.5                    pypi_0    pypi
stsci-imagestats          1.6.3                    pypi_0    pypi
stsci-stimage             0.2.5                    pypi_0    pypi
svo-filters               0.4.3                    pypi_0    pypi
tifffile                  2022.5.4                 pypi_0    pypi
tk                        8.6.12               h5d9f67b_0
tomli                     2.0.1                    pypi_0    pypi
toolz                     0.11.2                   pypi_0    pypi
tornado                   6.1                      pypi_0    pypi
tqdm                      4.64.0                   pypi_0    pypi
traitlets                 5.3.0                    pypi_0    pypi
tweakwcs                  0.7.4                    pypi_0    pypi
typing-extensions         4.2.0                    pypi_0    pypi
tzdata                    2022a                hda174b7_0
uncertainties             3.1.7                    pypi_0    pypi
urllib3                   1.26.9                   pypi_0    pypi
wcwidth                   0.2.5                    pypi_0    pypi
webencodings              0.5.1                    pypi_0    pypi
wheel                     0.37.1             pyhd3eb1b0_0
xarray                    2022.3.0                 pypi_0    pypi
xz                        5.2.5                hca72f7f_1
zipp                      3.8.0                    pypi_0    pypi
zlib                      1.2.12               h4dc903c_2

Code of Conduct

  • I agree to follow this project's Code of Conduct
@Witchblade101 Witchblade101 added the bug Something isn't working label Jul 15, 2022
@taylorbell57
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When you updated Eureka, somehow your jwst package version didn't get updated. You'll need to install a version >=1.4.0 - I'd recommend 1.6.0. And make sure all your other packages get updated too. When in doubt, make a new environment and install there

@Witchblade101
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Thanks, Taylor. I was meticulously following the install instructions from the Read the Docs page, which are probably out of date. I'll create a new environment with the latest versions of everything and try it again. I'll post the results here.

@taylorbell57
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Out of curiosity, did you follow the update part or the installation part of the instructions? I'm confused why the other packages didn't get updated and want to avoid that happening again in the future

@Witchblade101
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Witchblade101 commented Jul 15, 2022 •
edited
Loading

It was a a new install, but I may have done something wrong. It seems weird that it would grab an old version of the pipeline.

Especially since I see the environment.yml file has JWST==1.6.0

@Witchblade101
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My laptop is still grinding away, but it looks like whatever caused the earlier error was fixed my installing the JWST pipeline manually.

@Witchblade101
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I'll post the packages in the new environment after it's done with the stage 1 processing

@Witchblade101
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Witchblade101 commented Jul 15, 2022 •
edited by taylorbell57
Loading

S1 finished with a few warnings, but no errors.

The packages in the new environment were:

alabaster                 0.7.12                   pypi_0    pypi
appnope                   0.1.2           py39hecd8cb5_1001
argon2-cffi               21.3.0             pyhd3eb1b0_0
argon2-cffi-bindings      21.2.0           py39hca72f7f_0
asdf                      2.12.0                   pypi_0    pypi
asdf-astropy              0.2.1                    pypi_0    pypi
asdf-coordinates-schemas  0.1.0                    pypi_0    pypi
asdf-standard             1.0.2                    pypi_0    pypi
asdf-transform-schemas    0.2.2                    pypi_0    pypi
asdf-wcs-schemas          0.1.1                    pypi_0    pypi
asteval                   0.9.27                   pypi_0    pypi
astraeus                  0.2                      pypi_0    pypi
astropy                   5.1                      pypi_0    pypi
astropy-healpix           0.6                      pypi_0    pypi
astroquery                0.4.6                    pypi_0    pypi
astroscrappy              1.1.0                    pypi_0    pypi
asttokens                 2.0.5              pyhd3eb1b0_0
attrs                     21.4.0             pyhd3eb1b0_0
babel                     2.10.3                   pypi_0    pypi
backcall                  0.2.0              pyhd3eb1b0_0
batman-package            2.4.9                    pypi_0    pypi
bayesicfitting            3.0.1                    pypi_0    pypi
beautifulsoup4            4.11.1           py39hecd8cb5_0
blas                      1.0                         mkl
bleach                    4.1.0              pyhd3eb1b0_0
bokeh                     2.4.3                    pypi_0    pypi
bottleneck                1.3.5                    pypi_0    pypi
ca-certificates           2022.4.26            hecd8cb5_0
ccdproc                   2.3.1                    pypi_0    pypi
celerite                  0.4.2                    pypi_0    pypi
certifi                   2022.6.15        py39hecd8cb5_0
cffi                      1.15.0           py39hc55c11b_1
cftime                    1.6.1                    pypi_0    pypi
charset-normalizer        2.1.0                    pypi_0    pypi
cloudpickle               2.1.0                    pypi_0    pypi
corner                    2.2.1                    pypi_0    pypi
crds                      11.16.5                  pypi_0    pypi
cycler                    0.11.0                   pypi_0    pypi
cython                    0.29.30                  pypi_0    pypi
dask                      2022.6.0                 pypi_0    pypi
debugpy                   1.5.1            py39he9d5cce_0
decorator                 5.1.1              pyhd3eb1b0_0
defusedxml                0.7.1              pyhd3eb1b0_0
docutils                  0.18.1                   pypi_0    pypi
drizzle                   1.13.4                   pypi_0    pypi
dynesty                   1.2.3                    pypi_0    pypi
emcee                     3.1.2                    pypi_0    pypi
entrypoints               0.4              py39hecd8cb5_0
eureka                    0.2.1                    pypi_0    pypi
executing                 0.8.3              pyhd3eb1b0_0
exotic-ld                 2.0.0                    pypi_0    pypi
filelock                  3.7.1                    pypi_0    pypi
fonttools                 4.34.4                   pypi_0    pypi
fsspec                    2022.5.0                 pypi_0    pypi
future                    0.18.2                   pypi_0    pypi
george                    0.4.0                    pypi_0    pypi
gwcs                      0.18.1                   pypi_0    pypi
h5netcdf                  1.0.1                    pypi_0    pypi
h5py                      3.1.0                    pypi_0    pypi
html5lib                  1.1                      pypi_0    pypi
icu                       58.2                 h0a44026_3
idna                      3.3                      pypi_0    pypi
imageio                   2.19.3                   pypi_0    pypi
imagesize                 1.4.1                    pypi_0    pypi
importlib-metadata        4.12.0                   pypi_0    pypi
iniconfig                 1.1.1                    pypi_0    pypi
intel-openmp              2021.4.0          hecd8cb5_3538
ipykernel                 6.9.1            py39hecd8cb5_0
ipython                   8.4.0            py39hecd8cb5_0
ipython_genutils          0.2.0              pyhd3eb1b0_1
ipywidgets                7.6.5              pyhd3eb1b0_1
jedi                      0.18.1           py39hecd8cb5_1
jinja2                    3.0.3              pyhd3eb1b0_0
jmespath                  1.0.1                    pypi_0    pypi
jpeg                      9e                   hca72f7f_0
jsonschema                4.4.0            py39hecd8cb5_0
jupyter                   1.0.0            py39hecd8cb5_7
jupyter_client            7.2.2            py39hecd8cb5_0
jupyter_console           6.4.3              pyhd3eb1b0_0
jupyter_core              4.10.0           py39hecd8cb5_0
jupyterlab_pygments       0.1.2                      py_0
jupyterlab_widgets        1.0.0              pyhd3eb1b0_1
jwst                      1.6.1                    pypi_0    pypi
keyring                   23.7.0                   pypi_0    pypi
kiwisolver                1.4.3                    pypi_0    pypi
libcxx                    12.0.0               h2f01273_0
libffi                    3.3                  hb1e8313_2
libpng                    1.6.37               ha441bb4_0
libsodium                 1.0.18               h1de35cc_0
lmfit                     1.0.3                    pypi_0    pypi
locket                    1.0.0                    pypi_0    pypi
lxml                      4.9.1                    pypi_0    pypi
markupsafe                2.1.1            py39hca72f7f_0
matplotlib                3.5.2                    pypi_0    pypi
matplotlib-inline         0.1.2              pyhd3eb1b0_2
mistune                   0.8.4           py39h9ed2024_1000
mkl                       2021.4.0           hecd8cb5_637
mkl-service               2.4.0            py39h9ed2024_0
mkl_fft                   1.3.1            py39h4ab4a9b_0
mkl_random                1.2.2            py39hb2f4e1b_0
nbclient                  0.5.13           py39hecd8cb5_0
nbconvert                 6.4.4            py39hecd8cb5_0
nbformat                  5.3.0            py39hecd8cb5_0
ncurses                   6.3                  hca72f7f_3
nest-asyncio              1.5.5            py39hecd8cb5_0
netcdf4                   1.6.0                    pypi_0    pypi
networkx                  2.8.4                    pypi_0    pypi
notebook                  6.4.11           py39hecd8cb5_0
numpy                     1.22.3           py39h2e5f0a9_0
numpy-base                1.22.3           py39h3b1a694_0
numpydoc                  1.4.0                    pypi_0    pypi
openssl                   1.1.1q               hca72f7f_0
packaging                 21.3               pyhd3eb1b0_0
pandas                    1.4.3                    pypi_0    pypi
pandocfilters             1.5.0              pyhd3eb1b0_0
parsley                   1.3                      pypi_0    pypi
parso                     0.8.3              pyhd3eb1b0_0
partd                     1.2.0                    pypi_0    pypi
pexpect                   4.8.0              pyhd3eb1b0_3
photutils                 1.5.0                    pypi_0    pypi
pickleshare               0.7.5           pyhd3eb1b0_1003
pillow                    9.2.0                    pypi_0    pypi
pip                       22.1.2           py39hecd8cb5_0
pluggy                    1.0.0                    pypi_0    pypi
poppy                     1.0.3                    pypi_0    pypi
prometheus_client         0.13.1             pyhd3eb1b0_0
prompt-toolkit            3.0.20             pyhd3eb1b0_0
prompt_toolkit            3.0.20               hd3eb1b0_0
psutil                    5.9.1                    pypi_0    pypi
ptyprocess                0.7.0              pyhd3eb1b0_2
pure_eval                 0.2.2              pyhd3eb1b0_0
py                        1.11.0                   pypi_0    pypi
pycparser                 2.21               pyhd3eb1b0_0
pyerfa                    2.0.0.1                  pypi_0    pypi
pygments                  2.11.2             pyhd3eb1b0_0
pyparsing                 3.0.4              pyhd3eb1b0_0
pyqt                      5.9.2            py39h23ab428_6
pyrsistent                0.18.0           py39hca72f7f_0
pysynphot                 2.0.0                    pypi_0    pypi
pytest                    7.1.2                    pypi_0    pypi
python                    3.9.12               hdfd78df_1
python-dateutil           2.8.2              pyhd3eb1b0_0
python-fastjsonschema     2.15.1             pyhd3eb1b0_0
pytz                      2022.1                   pypi_0    pypi
pyvo                      1.3                      pypi_0    pypi
pywavelets                1.3.0                    pypi_0    pypi
pyyaml                    6.0                      pypi_0    pypi
pyzmq                     23.2.0           py39he9d5cce_0
qt                        5.9.7                h468cd18_1
qtconsole                 5.3.1            py39hecd8cb5_0
qtpy                      2.0.1              pyhd3eb1b0_0
readline                  8.1.2                hca72f7f_1
reproject                 0.8                      pypi_0    pypi
requests                  2.28.1                   pypi_0    pypi
scikit-image              0.19.3                   pypi_0    pypi
scipy                     1.8.1                    pypi_0    pypi
semantic-version          2.10.0                   pypi_0    pypi
send2trash                1.8.0              pyhd3eb1b0_1
setuptools                61.2.0           py39hecd8cb5_0
sip                       4.19.13          py39h23ab428_0
six                       1.16.0             pyhd3eb1b0_1
snowballstemmer           2.2.0                    pypi_0    pypi
soupsieve                 2.3.1              pyhd3eb1b0_0
spherical-geometry        1.2.22                   pypi_0    pypi
sphinx                    5.0.2                    pypi_0    pypi
sphinxcontrib-applehelp   1.0.2                    pypi_0    pypi
sphinxcontrib-devhelp     1.0.2                    pypi_0    pypi
sphinxcontrib-htmlhelp    2.0.0                    pypi_0    pypi
sphinxcontrib-jsmath      1.0.1                    pypi_0    pypi
sphinxcontrib-qthelp      1.0.3                    pypi_0    pypi
sphinxcontrib-serializinghtml 1.1.5                    pypi_0    pypi
sqlite                    3.38.5               h707629a_0
stack_data                0.2.0              pyhd3eb1b0_0
stcal                     1.0.0                    pypi_0    pypi
stdatamodels              0.4.3                    pypi_0    pypi
stpipe                    0.4.1                    pypi_0    pypi
stsci-image               2.3.5                    pypi_0    pypi
stsci-imagestats          1.6.3                    pypi_0    pypi
stsci-stimage             0.2.5                    pypi_0    pypi
svo-filters               0.4.3                    pypi_0    pypi
terminado                 0.13.1           py39hecd8cb5_0
testpath                  0.6.0            py39hecd8cb5_0
tifffile                  2022.5.4                 pypi_0    pypi
tk                        8.6.12               h5d9f67b_0
tomli                     2.0.1                    pypi_0    pypi
toolz                     0.12.0                   pypi_0    pypi
tornado                   6.1              py39h9ed2024_0
tqdm                      4.64.0                   pypi_0    pypi
traitlets                 5.1.1              pyhd3eb1b0_0
tweakwcs                  0.7.4                    pypi_0    pypi
typing-extensions         4.1.1                hd3eb1b0_0
typing_extensions         4.1.1              pyh06a4308_0
tzdata                    2022a                hda174b7_0
uncertainties             3.1.7                    pypi_0    pypi
urllib3                   1.26.10                  pypi_0    pypi
wcwidth                   0.2.5              pyhd3eb1b0_0
webencodings              0.5.1            py39hecd8cb5_1
wheel                     0.37.1             pyhd3eb1b0_0
widgetsnbextension        3.5.2            py39hecd8cb5_0
wiimatch                  0.2.1                    pypi_0    pypi
xarray                    2022.3.0                 pypi_0    pypi
xz                        5.2.5                hca72f7f_1
zeromq                    4.3.4                h23ab428_0
zipp                      3.8.1                    pypi_0    pypi
zlib                      1.2.12               h4dc903c_2

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Okay, I'll relabel this issue as a potential issue with installing with the conda environment file then and look into it more when I get the chance

@taylorbell57 taylorbell57 changed the title [Bug]: S1 missing value for 'engdb_pointing_quality'? [Bug]: Issue updating Eureka with conda? Jul 18, 2022
@kevin218 kevin218 moved this to To do in Road to v1.1 Jul 26, 2024
@taylorbell57 taylorbell57 mentioned this issue Aug 19, 2024
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@github-project-automation github-project-automation bot moved this from To do to Done in Road to v1.1 Aug 26, 2024
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@AarynnCarter AarynnCarter

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bug Something isn't working NIRSpec
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Bug patches and docs improvements for v1.0 kevin218/Eureka
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@Witchblade101 @AarynnCarter @taylorbell57