Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fhl dev #133

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

Fhl dev #133

wants to merge 2 commits into from

Conversation

benjaminfang
Copy link

1)change cmake command which used to build the software.
2)change cmake directive to find bamtools library.

@@ -9,7 +9,7 @@
# BAMTOOLS_FOUND - true if BAM has been found and can be used

find_path(BAMTOOLS_INCLUDE_DIR api/BamReader.h PATHS ${BAMTOOLS_ROOT}/include PATH_SUFFIXES bamtools ../include ../include/bamtools)
find_library(BAMTOOLS_LIBRARY bamtools PATHS ${BAMTOOLS_ROOT}/lib PATH_SUFFIXES bamtools ../lib)
find_library(BAMTOOLS_LIBRARY bamtools PATHS ${BAMTOOLS_ROOT}/lib64 ${BAMTOOLS_ROOT}/lib PATH_SUFFIXES bamtools ../lib)
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@benjaminfang The default is /lib64? We could check whether this exists in the Dockerfile + Docker image...

Copy link
Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

OK. On my system, CentOS8, it is.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants