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I tried running Kleborate v2.3.2 on a LinusMint 21.1 system using the --resistance option and got an Assertion Error:
Traceback (most recent call last): File "/home/nanopore/Kleborate/./kleborate-runner.py", line 22, in main() File "/home/nanopore/Kleborate/kleborate/main.py", line 64, in main results.update(get_resistance_results(data_folder, contigs, args, res_headers, File "/home/nanopore/Kleborate/kleborate/main.py", line 570, in get_resistance_results res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs, File "/home/nanopore/Kleborate/kleborate/resBLAST.py", line 32, in resblast_one_assembly hits_dict = blast_against_all(seqs, min_cov, min_ident, contigs, gene_info, File "/home/nanopore/Kleborate/kleborate/resBLAST.py", line 115, in blast_against_all aa_result = check_for_exact_aa_match(seqs, hit, contigs) File "/home/nanopore/Kleborate/kleborate/resBLAST.py", line 189, in check_for_exact_aa_match assert hit_seq == gene_nucl_seq AssertionError
I would be really happy about any suggestions how to fix this.
The text was updated successfully, but these errors were encountered:
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I tried running Kleborate v2.3.2 on a LinusMint 21.1 system using the --resistance option and got an Assertion Error:
Traceback (most recent call last):
File "/home/nanopore/Kleborate/./kleborate-runner.py", line 22, in
main()
File "/home/nanopore/Kleborate/kleborate/main.py", line 64, in main
results.update(get_resistance_results(data_folder, contigs, args, res_headers,
File "/home/nanopore/Kleborate/kleborate/main.py", line 570, in get_resistance_results
res_hits = resblast_one_assembly(contigs, gene_info, qrdr, trunc, omp, seqs,
File "/home/nanopore/Kleborate/kleborate/resBLAST.py", line 32, in resblast_one_assembly
hits_dict = blast_against_all(seqs, min_cov, min_ident, contigs, gene_info,
File "/home/nanopore/Kleborate/kleborate/resBLAST.py", line 115, in blast_against_all
aa_result = check_for_exact_aa_match(seqs, hit, contigs)
File "/home/nanopore/Kleborate/kleborate/resBLAST.py", line 189, in check_for_exact_aa_match
assert hit_seq == gene_nucl_seq
AssertionError
I would be really happy about any suggestions how to fix this.
The text was updated successfully, but these errors were encountered: